BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038152
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521663.1| pentatricopeptide repeat-containing protein,...   175   3e-42
ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containi...   163   1e-38
ref|XP_003593286.1| Pentatricopeptide repeat-containing protein ...   160   1e-37
sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-c...   149   3e-34
ref|NP_194836.1| pentatricopeptide repeat-containing protein [Ar...   149   3e-34

>ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539054|gb|EEF40650.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 578

 Score =  175 bits (444), Expect = 3e-42
 Identities = 77/135 (57%), Positives = 109/135 (80%)
 Frame = +2

Query: 5   ASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACS 184
           ASHQIFKE+ I+DSVSWS LI A+GL+G+  EAL LF++M  + +EPD +TFLA+LSAC+
Sbjct: 384 ASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACN 443

Query: 185 HGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAIW 364
           H G +++  ++F+ +++D ++ LT+EHYAC +DLLG+SG V++A+ I+  MP KPS  IW
Sbjct: 444 HSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIW 503

Query: 365 SSLVSACKTHGRLDV 409
           SSLVSACK HGRL++
Sbjct: 504 SSLVSACKIHGRLEI 518


>ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  163 bits (413), Expect = 1e-38
 Identities = 76/136 (55%), Positives = 102/136 (75%)
 Frame = +2

Query: 2   NASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSAC 181
           N S ++F E+P RD+V+WS+LI A+GL+G   +ALQ+F +M E  ++PD ITFLA+LSAC
Sbjct: 408 NGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSAC 467

Query: 182 SHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAI 361
           +H G + +  ++F+Q++ D  I LT+EHYAC +DLLGRSG +E A  I   MP KPS  I
Sbjct: 468 NHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKPSARI 527

Query: 362 WSSLVSACKTHGRLDV 409
           WSSLVSACK HGRLD+
Sbjct: 528 WSSLVSACKLHGRLDI 543



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 41/127 (32%), Positives = 69/127 (54%)
 Frame = +2

Query: 17  IFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACSHGGF 196
           IF+    RD V WS++I +    G S +AL+LFN+M  E+IEP+ +T LA++SAC++   
Sbjct: 312 IFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSS 371

Query: 197 IEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAIWSSLV 376
           ++  C L   I +      ++      I++  + G +  +  +   MP + +   WSSL+
Sbjct: 372 LKHGCGLHGYIFKFG-FCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDN-VTWSSLI 429

Query: 377 SACKTHG 397
           SA   HG
Sbjct: 430 SAYGLHG 436


>ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482334|gb|AES63537.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  160 bits (404), Expect = 1e-37
 Identities = 74/134 (55%), Positives = 100/134 (74%)
 Frame = +2

Query: 8   SHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACSH 187
           S +IF E+P RDSV+W+++I A+GL+GY  +ALQ F +M E  ++ D +TFLA+LSAC+H
Sbjct: 429 SRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNH 488

Query: 188 GGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAIWS 367
            G + +  +LFEQ+  D  I +T+EHYAC IDL GRSG +E+A  I+  MP KPS  IWS
Sbjct: 489 AGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSARIWS 548

Query: 368 SLVSACKTHGRLDV 409
           SLVS+CK HGRLD+
Sbjct: 549 SLVSSCKLHGRLDI 562



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
 Frame = +2

Query: 8   SHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACS- 184
           + +IF+   +RD V WS++I ++   G S +AL+LFN+M  E+ EP+ +T LA++SAC+ 
Sbjct: 328 AERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTN 387

Query: 185 -----HGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKP 349
                HGG I      F        I  ++      I++  + G+++++  I   MP + 
Sbjct: 388 LSSFKHGGVIHGYILKF-------GIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRD 440

Query: 350 SPAIWSSLVSACKTHG 397
           S   W+S++SA   HG
Sbjct: 441 S-VTWNSMISAYGLHG 455


>sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/136 (50%), Positives = 103/136 (75%)
 Frame = +2

Query: 2   NASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSAC 181
           +A+ ++F E+  +D VSWS++I A+GL+G+ +EAL++F  M++   E D++ FLAILSAC
Sbjct: 416 SAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSAC 475

Query: 182 SHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAI 361
           +H G +E+A  +F Q  + + + +TLEHYACYI+LLGR G +++A+ +   MP KPS  I
Sbjct: 476 NHAGLVEEAQTIFTQAGKYH-MPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARI 534

Query: 362 WSSLVSACKTHGRLDV 409
           WSSL+SAC+THGRLDV
Sbjct: 535 WSSLLSACETHGRLDV 550



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 69/130 (53%)
 Frame = +2

Query: 8   SHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACSH 187
           S  +F+   +RD V WS++I  +   G  +E + L NQM +E IE +++T LAI+SAC++
Sbjct: 317 SRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTN 376

Query: 188 GGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAIWS 367
              +  A  +  QI +   +   L   A  ID+  + G++  A  +   +  K   + WS
Sbjct: 377 STLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREVFYELTEKDLVS-WS 434

Query: 368 SLVSACKTHG 397
           S+++A   HG
Sbjct: 435 SMINAYGLHG 444


>ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis
           thaliana] gi|7270009|emb|CAB79825.1| putative protein
           [Arabidopsis thaliana] gi|332660453|gb|AEE85853.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 613

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/136 (50%), Positives = 103/136 (75%)
 Frame = +2

Query: 2   NASHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSAC 181
           +A+ ++F E+  +D VSWS++I A+GL+G+ +EAL++F  M++   E D++ FLAILSAC
Sbjct: 405 SAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSAC 464

Query: 182 SHGGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAI 361
           +H G +E+A  +F Q  + + + +TLEHYACYI+LLGR G +++A+ +   MP KPS  I
Sbjct: 465 NHAGLVEEAQTIFTQAGKYH-MPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARI 523

Query: 362 WSSLVSACKTHGRLDV 409
           WSSL+SAC+THGRLDV
Sbjct: 524 WSSLLSACETHGRLDV 539



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 40/130 (30%), Positives = 69/130 (53%)
 Frame = +2

Query: 8   SHQIFKEIPIRDSVSWSALIRAHGLYGYSAEALQLFNQMLEEDIEPDNITFLAILSACSH 187
           S  +F+   +RD V WS++I  +   G  +E + L NQM +E IE +++T LAI+SAC++
Sbjct: 306 SRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTN 365

Query: 188 GGFIEQACKLFEQIQQDNRIDLTLEHYACYIDLLGRSGNVENAYTIITGMPYKPSPAIWS 367
              +  A  +  QI +   +   L   A  ID+  + G++  A  +   +  K   + WS
Sbjct: 366 STLLSFASTVHSQILKCGFMSHILLGNA-LIDMYAKCGSLSAAREVFYELTEKDLVS-WS 423

Query: 368 SLVSACKTHG 397
           S+++A   HG
Sbjct: 424 SMINAYGLHG 433