BLASTX nr result

ID: Coptis24_contig00038135 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038135
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
emb|CBI33142.3| unnamed protein product [Vitis vinifera]              124   1e-26
emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]   124   1e-26
ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23
ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [S...   111   5e-23

>ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF  MP+K
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 61  NVVAITAMITGFCKEGNME 5
           N+VA+TAMITG+CKEG  +
Sbjct: 232 NIVAMTAMITGYCKEGKTD 250



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 34/79 (43%), Positives = 55/79 (69%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+T M+ GY + G  + A +LF++MP+KN V+ T MI+GY + GK D+AK LF  +P +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262

Query: 61  NVVAITAMITGFCKEGNME 5
           ++ +  AMITG+ + G+ E
Sbjct: 263 DLASWNAMITGYAQNGSGE 281



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = -3

Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
           S+ AM+ G  +   VE A  LF+ MP +N +S+T M+ GY + G+ ++A+ALF  MP+KN
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201

Query: 58  VVAITAMITGFCKEGNME 5
           VV+ T MI+G+ + G  +
Sbjct: 202 VVSWTVMISGYVENGKFD 219



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 33/78 (42%), Positives = 53/78 (67%)
 Frame = -3

Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
           ++   +   A+ G++  AR LFD MP+++ VSW  +I+GY +NG FDE+K LFG+MP KN
Sbjct: 49  AFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKN 108

Query: 58  VVAITAMITGFCKEGNME 5
           VV+  +MI G  ++  ++
Sbjct: 109 VVSWNSMIAGCIEDERID 126



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +M+ G  +   ++ A   F  MP +N  SW  MISG V   + +EA  LF  MP +
Sbjct: 110 VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 169

Query: 61  NVVAITAMITGFCKEGNME 5
           NV++ TAM+ G+ K G +E
Sbjct: 170 NVISYTAMVDGYAKIGEIE 188



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +++ GY + G  + ++ LF  MP KN VSW  MI+G +E+ + DEA   F  MP++
Sbjct: 79  VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 138

Query: 61  NVVAITAMITGFCKEGNME 5
           N  +  AMI+G  +   +E
Sbjct: 139 NTASWNAMISGLVRYDRVE 157



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
           ++ TAM+ GY ++G  ++A+ LFD++P ++  SW  MI+GY +NG  +EA  L   M
Sbjct: 234 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290


>emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF  MP+K
Sbjct: 100 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 159

Query: 61  NVVAITAMITGFCKEGNME 5
           N+VA+TAMITG+CKEG  +
Sbjct: 160 NIVAMTAMITGYCKEGKTD 178



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 34/79 (43%), Positives = 55/79 (69%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+T M+ GY + G  + A +LF++MP+KN V+ T MI+GY + GK D+AK LF  +P +
Sbjct: 131 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 190

Query: 61  NVVAITAMITGFCKEGNME 5
           ++ +  AMITG+ + G+ E
Sbjct: 191 DLASWNAMITGYAQNGSGE 209



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = -3

Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
           S+ AM+ G  +   VE A  LF+ MP +N +S+T M+ GY + G+ ++A+ALF  MP+KN
Sbjct: 70  SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 129

Query: 58  VVAITAMITGFCKEGNME 5
           VV+ T MI+G+ + G  +
Sbjct: 130 VVSWTVMISGYVENGKFD 147



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +M+ G  +   ++ A   F  MP +N  SW  MISG V   + +EA  LF  MP +
Sbjct: 38  VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 97

Query: 61  NVVAITAMITGFCKEGNME 5
           NV++ TAM+ G+ K G +E
Sbjct: 98  NVISYTAMVDGYAKIGEIE 116



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +++ GY + G  + ++ LF  MP KN VSW  MI+G +E+ + DEA   F  MP++
Sbjct: 7   VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 66

Query: 61  NVVAITAMITGFCKEGNME 5
           N  +  AMI+G  +   +E
Sbjct: 67  NTASWNAMISGLVRYDRVE 85



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/54 (48%), Positives = 40/54 (74%)
 Frame = -3

Query: 166 MPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNME 5
           MP+++ VSW  +I+GY +NG FDE+K LFG+MP KNVV+  +MI G  ++  ++
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERID 54



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
           ++ TAM+ GY ++G  ++A+ LFD++P ++  SW  MI+GY +NG  +EA  L   M
Sbjct: 162 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 218


>emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  124 bits (310), Expect = 1e-26
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF  MP+K
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 61  NVVAITAMITGFCKEGNME 5
           N+VA+TAMITG+CKEG  +
Sbjct: 232 NIVAMTAMITGYCKEGKTD 250



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 34/79 (43%), Positives = 55/79 (69%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+T M+ GY + G  + A +LF++MP+KN V+ T MI+GY + GK D+AK LF  +P +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262

Query: 61  NVVAITAMITGFCKEGNME 5
           ++ +  AMITG+ + G+ E
Sbjct: 263 DLASWNAMITGYAQNGSGE 281



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = -3

Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
           S+ AM+ G  +   VE A  LF+ MP +N +S+T M+ GY + G+ ++A+ALF  MP+KN
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201

Query: 58  VVAITAMITGFCKEGNME 5
           VV+ T MI+G+ + G  +
Sbjct: 202 VVSWTVMISGYVENGKFD 219



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 32/78 (41%), Positives = 53/78 (67%)
 Frame = -3

Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
           ++   +   A+ G++  AR +FD MP+++ VSW  +I+GY +NG FDE+K LFG+MP KN
Sbjct: 49  AFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKN 108

Query: 58  VVAITAMITGFCKEGNME 5
           VV+  +MI G  ++  ++
Sbjct: 109 VVSWNSMIAGCIEDERID 126



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +M+ G  +   ++ A   F  MP +N  SW  MISG V   + +EA  LF  MP +
Sbjct: 110 VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 169

Query: 61  NVVAITAMITGFCKEGNME 5
           NV++ TAM+ G+ K G +E
Sbjct: 170 NVISYTAMVDGYAKIGEIE 188



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +++ GY + G  + ++ LF  MP KN VSW  MI+G +E+ + DEA   F  MP++
Sbjct: 79  VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 138

Query: 61  NVVAITAMITGFCKEGNME 5
           N  +  AMI+G  +   +E
Sbjct: 139 NTASWNAMISGLVRYDRVE 157



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
           ++ TAM+ GY ++G  ++A+ LFD++P ++  SW  MI+GY +NG  +EA  L   M
Sbjct: 234 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290


>ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  113 bits (283), Expect = 1e-23
 Identities = 51/80 (63%), Positives = 64/80 (80%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +SYT M+DG A++G V RAR +FD MP +N VSW  MI+GYVEN  FDEA+ LF  MP+K
Sbjct: 133 VSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDK 192

Query: 61  NVVAITAMITGFCKEGNMES 2
           NVVA TAMITG+CK+G++ES
Sbjct: 193 NVVACTAMITGYCKDGDVES 212



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/79 (41%), Positives = 52/79 (65%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ AM+ GY +    + AR LF+ MP+KN V+ T MI+GY ++G  + A+ LF  +P K
Sbjct: 164 VSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVK 223

Query: 61  NVVAITAMITGFCKEGNME 5
           +V++  AMITG+   G+ E
Sbjct: 224 DVISWNAMITGYVHNGHGE 242



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 30/78 (38%), Positives = 48/78 (61%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           IS+ +++ G    G ++ A + F R P +N  SW  M++G V  G+ D+A ALFG MP++
Sbjct: 71  ISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQR 130

Query: 61  NVVAITAMITGFCKEGNM 8
           NVV+ T M+ G  + G +
Sbjct: 131 NVVSYTTMVDGLARRGEV 148



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/62 (46%), Positives = 40/62 (64%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           ++ TAM+ GY + G VE AR LFD +P K+ +SW  MI+GYV NG  +EA  L  +M  +
Sbjct: 195 VACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFRE 254

Query: 61  NV 56
            V
Sbjct: 255 GV 256



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGH-VERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPE 65
           +S+ A++    + G  +  AR LFD MP++N +SW  +++G + +G  D A A F   P 
Sbjct: 39  VSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPR 98

Query: 64  KNVVAITAMITGFCKEGNME 5
           +NV +  AM+ G  + G M+
Sbjct: 99  RNVASWNAMLAGLVRLGRMD 118


>ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
           gi|241942336|gb|EES15481.1| hypothetical protein
           SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  111 bits (278), Expect = 5e-23
 Identities = 52/80 (65%), Positives = 63/80 (78%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +SYT M+DG A++G V RAR +FD MP++N VSW  MISGYVENG F EA  LF  MPEK
Sbjct: 143 VSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEK 202

Query: 61  NVVAITAMITGFCKEGNMES 2
           NVVA TAMIT +CK+G++ES
Sbjct: 203 NVVACTAMITSYCKQGDVES 222



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/79 (36%), Positives = 45/79 (56%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ AM+ GY + G    A  LF+ MP KN V+ T MI+ Y + G  + A+ LF  +  K
Sbjct: 174 VSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAK 233

Query: 61  NVVAITAMITGFCKEGNME 5
           +V++   MI G+   G+ E
Sbjct: 234 DVISWNTMIAGYVHNGHGE 252



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/78 (32%), Positives = 46/78 (58%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           +S+ +++ G    G ++ A + F   P +N  +W  M++G +  G+ D+A  LFG MP++
Sbjct: 81  VSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKR 140

Query: 61  NVVAITAMITGFCKEGNM 8
           NVV+ T M+ G  + G +
Sbjct: 141 NVVSYTTMVDGLARRGEV 158



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/62 (43%), Positives = 39/62 (62%)
 Frame = -3

Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
           ++ TAM+  Y ++G VE AR LFD +  K+ +SW  MI+GYV NG  +EA  L  +M  +
Sbjct: 205 VACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFRE 264

Query: 61  NV 56
            V
Sbjct: 265 GV 266


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