BLASTX nr result
ID: Coptis24_contig00038135
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00038135
(243 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containi... 124 1e-26
emb|CBI33142.3| unnamed protein product [Vitis vinifera] 124 1e-26
emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera] 124 1e-26
ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containi... 113 1e-23
ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [S... 111 5e-23
>ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 124 bits (310), Expect = 1e-26
Identities = 57/79 (72%), Positives = 69/79 (87%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF MP+K
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231
Query: 61 NVVAITAMITGFCKEGNME 5
N+VA+TAMITG+CKEG +
Sbjct: 232 NIVAMTAMITGYCKEGKTD 250
Score = 77.8 bits (190), Expect = 8e-13
Identities = 34/79 (43%), Positives = 55/79 (69%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+T M+ GY + G + A +LF++MP+KN V+ T MI+GY + GK D+AK LF +P +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262
Query: 61 NVVAITAMITGFCKEGNME 5
++ + AMITG+ + G+ E
Sbjct: 263 DLASWNAMITGYAQNGSGE 281
Score = 77.0 bits (188), Expect = 1e-12
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = -3
Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
S+ AM+ G + VE A LF+ MP +N +S+T M+ GY + G+ ++A+ALF MP+KN
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201
Query: 58 VVAITAMITGFCKEGNME 5
VV+ T MI+G+ + G +
Sbjct: 202 VVSWTVMISGYVENGKFD 219
Score = 75.1 bits (183), Expect = 6e-12
Identities = 33/78 (42%), Positives = 53/78 (67%)
Frame = -3
Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
++ + A+ G++ AR LFD MP+++ VSW +I+GY +NG FDE+K LFG+MP KN
Sbjct: 49 AFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKN 108
Query: 58 VVAITAMITGFCKEGNME 5
VV+ +MI G ++ ++
Sbjct: 109 VVSWNSMIAGCIEDERID 126
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +M+ G + ++ A F MP +N SW MISG V + +EA LF MP +
Sbjct: 110 VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 169
Query: 61 NVVAITAMITGFCKEGNME 5
NV++ TAM+ G+ K G +E
Sbjct: 170 NVISYTAMVDGYAKIGEIE 188
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +++ GY + G + ++ LF MP KN VSW MI+G +E+ + DEA F MP++
Sbjct: 79 VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 138
Query: 61 NVVAITAMITGFCKEGNME 5
N + AMI+G + +E
Sbjct: 139 NTASWNAMISGLVRYDRVE 157
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
++ TAM+ GY ++G ++A+ LFD++P ++ SW MI+GY +NG +EA L M
Sbjct: 234 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290
>emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 124 bits (310), Expect = 1e-26
Identities = 57/79 (72%), Positives = 69/79 (87%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF MP+K
Sbjct: 100 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 159
Query: 61 NVVAITAMITGFCKEGNME 5
N+VA+TAMITG+CKEG +
Sbjct: 160 NIVAMTAMITGYCKEGKTD 178
Score = 77.8 bits (190), Expect = 8e-13
Identities = 34/79 (43%), Positives = 55/79 (69%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+T M+ GY + G + A +LF++MP+KN V+ T MI+GY + GK D+AK LF +P +
Sbjct: 131 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 190
Query: 61 NVVAITAMITGFCKEGNME 5
++ + AMITG+ + G+ E
Sbjct: 191 DLASWNAMITGYAQNGSGE 209
Score = 77.0 bits (188), Expect = 1e-12
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = -3
Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
S+ AM+ G + VE A LF+ MP +N +S+T M+ GY + G+ ++A+ALF MP+KN
Sbjct: 70 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 129
Query: 58 VVAITAMITGFCKEGNME 5
VV+ T MI+G+ + G +
Sbjct: 130 VVSWTVMISGYVENGKFD 147
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +M+ G + ++ A F MP +N SW MISG V + +EA LF MP +
Sbjct: 38 VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 97
Query: 61 NVVAITAMITGFCKEGNME 5
NV++ TAM+ G+ K G +E
Sbjct: 98 NVISYTAMVDGYAKIGEIE 116
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +++ GY + G + ++ LF MP KN VSW MI+G +E+ + DEA F MP++
Sbjct: 7 VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 66
Query: 61 NVVAITAMITGFCKEGNME 5
N + AMI+G + +E
Sbjct: 67 NTASWNAMISGLVRYDRVE 85
Score = 60.1 bits (144), Expect = 2e-07
Identities = 26/54 (48%), Positives = 40/54 (74%)
Frame = -3
Query: 166 MPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKNVVAITAMITGFCKEGNME 5
MP+++ VSW +I+GY +NG FDE+K LFG+MP KNVV+ +MI G ++ ++
Sbjct: 1 MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERID 54
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
++ TAM+ GY ++G ++A+ LFD++P ++ SW MI+GY +NG +EA L M
Sbjct: 162 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 218
>emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 124 bits (310), Expect = 1e-26
Identities = 57/79 (72%), Positives = 69/79 (87%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
ISYTAM+DGYA+ G +E+AR+LF+ MP KN VSWTVMISGYVENGKFDEA+ LF MP+K
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231
Query: 61 NVVAITAMITGFCKEGNME 5
N+VA+TAMITG+CKEG +
Sbjct: 232 NIVAMTAMITGYCKEGKTD 250
Score = 77.8 bits (190), Expect = 8e-13
Identities = 34/79 (43%), Positives = 55/79 (69%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+T M+ GY + G + A +LF++MP+KN V+ T MI+GY + GK D+AK LF +P +
Sbjct: 203 VSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 262
Query: 61 NVVAITAMITGFCKEGNME 5
++ + AMITG+ + G+ E
Sbjct: 263 DLASWNAMITGYAQNGSGE 281
Score = 77.0 bits (188), Expect = 1e-12
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = -3
Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
S+ AM+ G + VE A LF+ MP +N +S+T M+ GY + G+ ++A+ALF MP+KN
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKN 201
Query: 58 VVAITAMITGFCKEGNME 5
VV+ T MI+G+ + G +
Sbjct: 202 VVSWTVMISGYVENGKFD 219
Score = 73.9 bits (180), Expect = 1e-11
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 238 SYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEKN 59
++ + A+ G++ AR +FD MP+++ VSW +I+GY +NG FDE+K LFG+MP KN
Sbjct: 49 AFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKN 108
Query: 58 VVAITAMITGFCKEGNME 5
VV+ +MI G ++ ++
Sbjct: 109 VVSWNSMIAGCIEDERID 126
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +M+ G + ++ A F MP +N SW MISG V + +EA LF MP +
Sbjct: 110 VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR 169
Query: 61 NVVAITAMITGFCKEGNME 5
NV++ TAM+ G+ K G +E
Sbjct: 170 NVISYTAMVDGYAKIGEIE 188
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +++ GY + G + ++ LF MP KN VSW MI+G +E+ + DEA F MP++
Sbjct: 79 VSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR 138
Query: 61 NVVAITAMITGFCKEGNME 5
N + AMI+G + +E
Sbjct: 139 NTASWNAMISGLVRYDRVE 157
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMM 71
++ TAM+ GY ++G ++A+ LFD++P ++ SW MI+GY +NG +EA L M
Sbjct: 234 VAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290
>ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 113 bits (283), Expect = 1e-23
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+SYT M+DG A++G V RAR +FD MP +N VSW MI+GYVEN FDEA+ LF MP+K
Sbjct: 133 VSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDK 192
Query: 61 NVVAITAMITGFCKEGNMES 2
NVVA TAMITG+CK+G++ES
Sbjct: 193 NVVACTAMITGYCKDGDVES 212
Score = 72.4 bits (176), Expect = 4e-11
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ AM+ GY + + AR LF+ MP+KN V+ T MI+GY ++G + A+ LF +P K
Sbjct: 164 VSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVK 223
Query: 61 NVVAITAMITGFCKEGNME 5
+V++ AMITG+ G+ E
Sbjct: 224 DVISWNAMITGYVHNGHGE 242
Score = 68.6 bits (166), Expect = 5e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
IS+ +++ G G ++ A + F R P +N SW M++G V G+ D+A ALFG MP++
Sbjct: 71 ISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQR 130
Query: 61 NVVAITAMITGFCKEGNM 8
NVV+ T M+ G + G +
Sbjct: 131 NVVSYTTMVDGLARRGEV 148
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
++ TAM+ GY + G VE AR LFD +P K+ +SW MI+GYV NG +EA L +M +
Sbjct: 195 VACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFRE 254
Query: 61 NV 56
V
Sbjct: 255 GV 256
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGH-VERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPE 65
+S+ A++ + G + AR LFD MP++N +SW +++G + +G D A A F P
Sbjct: 39 VSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPR 98
Query: 64 KNVVAITAMITGFCKEGNME 5
+NV + AM+ G + G M+
Sbjct: 99 RNVASWNAMLAGLVRLGRMD 118
>ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein
SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 111 bits (278), Expect = 5e-23
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+SYT M+DG A++G V RAR +FD MP++N VSW MISGYVENG F EA LF MPEK
Sbjct: 143 VSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEK 202
Query: 61 NVVAITAMITGFCKEGNMES 2
NVVA TAMIT +CK+G++ES
Sbjct: 203 NVVACTAMITSYCKQGDVES 222
Score = 61.6 bits (148), Expect = 6e-08
Identities = 29/79 (36%), Positives = 45/79 (56%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ AM+ GY + G A LF+ MP KN V+ T MI+ Y + G + A+ LF + K
Sbjct: 174 VSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAK 233
Query: 61 NVVAITAMITGFCKEGNME 5
+V++ MI G+ G+ E
Sbjct: 234 DVISWNTMIAGYVHNGHGE 252
Score = 60.8 bits (146), Expect = 1e-07
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
+S+ +++ G G ++ A + F P +N +W M++G + G+ D+A LFG MP++
Sbjct: 81 VSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKR 140
Query: 61 NVVAITAMITGFCKEGNM 8
NVV+ T M+ G + G +
Sbjct: 141 NVVSYTTMVDGLARRGEV 158
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -3
Query: 241 ISYTAMMDGYAQKGHVERARSLFDRMPNKNAVSWTVMISGYVENGKFDEAKALFGMMPEK 62
++ TAM+ Y ++G VE AR LFD + K+ +SW MI+GYV NG +EA L +M +
Sbjct: 205 VACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFRE 264
Query: 61 NV 56
V
Sbjct: 265 GV 266