BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038047
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
emb|CBI27235.3| unnamed protein product [Vitis vinifera]              117   1e-24
ref|XP_002532711.1| pentatricopeptide repeat-containing protein,...   117   1e-24
ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar...   103   1e-20

>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  117 bits (292), Expect = 1e-24
 Identities = 52/79 (65%), Positives = 64/79 (81%)
 Frame = -1

Query: 242 EAFELFKEMASEGGMAGKVKPNEITLIAVFAACSHSKMVDEGVDLFQRMKPDYNIEPTPD 63
           EA ELFK M +E G  G+ KPNE+T I VFAACSHS ++ EG++LF RMK D+ +EPT D
Sbjct: 602 EALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD 661

Query: 62  HYACVVDLLGRAGKLDDAY 6
           HYACVVDLLGRAG+L++AY
Sbjct: 662 HYACVVDLLGRAGQLEEAY 680


>emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  117 bits (292), Expect = 1e-24
 Identities = 52/79 (65%), Positives = 64/79 (81%)
 Frame = -1

Query: 242 EAFELFKEMASEGGMAGKVKPNEITLIAVFAACSHSKMVDEGVDLFQRMKPDYNIEPTPD 63
           EA ELFK M +E G  G+ KPNE+T I VFAACSHS ++ EG++LF RMK D+ +EPT D
Sbjct: 402 EALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD 461

Query: 62  HYACVVDLLGRAGKLDDAY 6
           HYACVVDLLGRAG+L++AY
Sbjct: 462 HYACVVDLLGRAGQLEEAY 480


>ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527557|gb|EEF29678.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 679

 Score =  117 bits (292), Expect = 1e-24
 Identities = 53/79 (67%), Positives = 64/79 (81%)
 Frame = -1

Query: 242 EAFELFKEMASEGGMAGKVKPNEITLIAVFAACSHSKMVDEGVDLFQRMKPDYNIEPTPD 63
           EA ELFK+M ++G   G+VKP E+T+IA+ AACSHS MVDEG+ LF RMK D+ IEP PD
Sbjct: 583 EALELFKDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPD 642

Query: 62  HYACVVDLLGRAGKLDDAY 6
           HYACV DLLGRAGK++ AY
Sbjct: 643 HYACVADLLGRAGKVEQAY 661


>ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|222846645|gb|EEE84192.1|
           predicted protein [Populus trichocarpa]
          Length = 814

 Score =  115 bits (287), Expect = 5e-24
 Identities = 49/79 (62%), Positives = 66/79 (83%)
 Frame = -1

Query: 242 EAFELFKEMASEGGMAGKVKPNEITLIAVFAACSHSKMVDEGVDLFQRMKPDYNIEPTPD 63
           E+ ELF++M +EG   G+VKP E+T IA+FA+CSHS MVDEG+ LF +MK ++ IEP PD
Sbjct: 520 ESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPD 579

Query: 62  HYACVVDLLGRAGKLDDAY 6
           HYAC+VDL+GRAGK+++AY
Sbjct: 580 HYACIVDLVGRAGKVEEAY 598


>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
           gi|332646133|gb|AEE79654.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  103 bits (257), Expect = 1e-20
 Identities = 49/79 (62%), Positives = 61/79 (77%)
 Frame = -1

Query: 242 EAFELFKEMASEGGMAGKVKPNEITLIAVFAACSHSKMVDEGVDLFQRMKPDYNIEPTPD 63
           EA +L + M  +G     VKPNE+T I+VFAACSHS MVDEG+ +F  MKPDY +EP+ D
Sbjct: 601 EAIDLLRMMMVQG-----VKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655

Query: 62  HYACVVDLLGRAGKLDDAY 6
           HYACVVDLLGRAG++ +AY
Sbjct: 656 HYACVVDLLGRAGRIKEAY 674