BLASTX nr result
ID: Coptis24_contig00037874
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037874
(342 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523370.1| pentatricopeptide repeat-containing protein,... 128 6e-28
ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containi... 126 2e-27
emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera] 126 2e-27
ref|XP_002320192.1| predicted protein [Populus trichocarpa] gi|2... 124 1e-26
ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containi... 122 3e-26
>ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223537458|gb|EEF39086.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 695
Score = 128 bits (321), Expect = 6e-28
Identities = 64/106 (60%), Positives = 77/106 (72%)
Frame = +1
Query: 25 MFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSLINMYT 204
+FR MQ S KA+ T+ K+LQACGK EALNEGKQIHGY+I+HALE N I NSLI+MY+
Sbjct: 253 LFRGMQFSFAKADASTVLKMLQACGKEEALNEGKQIHGYVIKHALESNLWISNSLISMYS 312
Query: 205 KNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+N K+ +R VFDSM+ SWNSIIS Y GYL AW+LF M
Sbjct: 313 RNGKIILSRRVFDSMKDHNLSSWNSIISSYTALGYLNGAWKLFHEM 358
Score = 84.3 bits (207), Expect = 9e-15
Identities = 42/114 (36%), Positives = 69/114 (60%)
Frame = +1
Query: 1 GDLMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVIC 180
G + L + +KMQ++G + N +I+ +LQ +L L GK IHGY+IR+ L + +
Sbjct: 381 GSYKEVLMILQKMQVTGFRPNSSSITSVLQTVTELRLLKIGKGIHGYVIRNRLNPDLYVE 440
Query: 181 NSLINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
SL++MY KN + ++ VFD+M+ ++WNS+I+GYA G ++A L M
Sbjct: 441 ASLLDMYVKNNCLATSQAVFDNMKNRNIVAWNSLITGYAYKGLFDDAKRLLNKM 494
Score = 79.0 bits (193), Expect = 4e-13
Identities = 40/114 (35%), Positives = 63/114 (55%)
Frame = +1
Query: 1 GDLMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVIC 180
G+ + L F +MQ G+K N T+S LL+ CG L L +GK+IH ++ + I
Sbjct: 552 GNYKESLEFFIQMQQEGIKPNSTTVSSLLKTCGGLSLLKKGKEIHCLSVKSGFTGDIYIA 611
Query: 181 NSLINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+L++MY+K+ ++ AR VF + T WN +I G+A G +EA L+ M
Sbjct: 612 TALVDMYSKSGNLKSAREVFKRTKNKTLACWNCMIMGFAIYGLGKEAISLYDEM 665
>ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 126 bits (316), Expect = 2e-27
Identities = 60/112 (53%), Positives = 79/112 (70%)
Frame = +1
Query: 7 LMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNS 186
L KG+ +FRKMQ S +KA TI ++LQACGK+ ALN KQIHGY+ R L+ + +CN
Sbjct: 215 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 274
Query: 187 LINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
LI+MY+KN K+ AR VFDSM+ + SWNS+IS YA G+L +AW LF +
Sbjct: 275 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL 326
Score = 86.7 bits (213), Expect = 2e-15
Identities = 41/108 (37%), Positives = 66/108 (61%)
Frame = +1
Query: 19 LYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSLINM 198
L + ++MQ G K N +++ +LQA +L LN GK+ HGY++R+ + + + SLI+M
Sbjct: 355 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 414
Query: 199 YTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
Y KN + A+ VFD+M+ +WNS++SGY+ G E+A L M
Sbjct: 415 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 462
Score = 76.3 bits (186), Expect = 3e-12
Identities = 42/114 (36%), Positives = 64/114 (56%)
Frame = +1
Query: 1 GDLMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVIC 180
G+ L F +MQ GV N +I+ LL+AC L L +GK+IH IR+ + +
Sbjct: 520 GNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA 579
Query: 181 NSLINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+LI+MY+K++ ++ A VF +Q T SWN +I G+A G +EA +F M
Sbjct: 580 TALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM 633
>emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 126 bits (316), Expect = 2e-27
Identities = 60/112 (53%), Positives = 79/112 (70%)
Frame = +1
Query: 7 LMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNS 186
L KG+ +FRKMQ S +KA TI ++LQACGK+ ALN KQIHGY+ R L+ + +CN
Sbjct: 756 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815
Query: 187 LINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
LI+MY+KN K+ AR VFDSM+ + SWNS+IS YA G+L +AW LF +
Sbjct: 816 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL 867
Score = 86.7 bits (213), Expect = 2e-15
Identities = 41/108 (37%), Positives = 66/108 (61%)
Frame = +1
Query: 19 LYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSLINM 198
L + ++MQ G K N +++ +LQA +L LN GK+ HGY++R+ + + + SLI+M
Sbjct: 896 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955
Query: 199 YTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
Y KN + A+ VFD+M+ +WNS++SGY+ G E+A L M
Sbjct: 956 YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 1003
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/94 (37%), Positives = 55/94 (58%)
Frame = +1
Query: 61 NQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSLINMYTKNAKVRPARNVF 240
N +I+ LL+AC L L +GK+IH IR+ + + +LI+MY+K++ ++ A VF
Sbjct: 1035 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 1094
Query: 241 DSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+Q T SWN +I G+A G +EA +F M
Sbjct: 1095 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM 1128
>ref|XP_002320192.1| predicted protein [Populus trichocarpa] gi|222860965|gb|EEE98507.1|
predicted protein [Populus trichocarpa]
Length = 398
Score = 124 bits (310), Expect = 1e-26
Identities = 61/111 (54%), Positives = 78/111 (70%)
Frame = +1
Query: 10 MKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSL 189
+K L +FR+MQ K N T+ K+LQAC K ALNEGKQIHGY+++ A+E N ICNSL
Sbjct: 235 VKALELFREMQFLTSKVNATTVLKILQACSKKGALNEGKQIHGYVLKLAMESNLSICNSL 294
Query: 190 INMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
I MY++N K++ A VFDSM+ + SWNSIIS Y+ GYL +AW LF M
Sbjct: 295 IIMYSRNGKIKLASRVFDSMKDHSLSSWNSIISSYSTLGYLNDAWNLFCKM 345
>ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 122 bits (306), Expect = 3e-26
Identities = 61/108 (56%), Positives = 75/108 (69%)
Frame = +1
Query: 19 LYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSLINM 198
L +FR+MQ + KA TI KLLQACGKL ALNEGKQIHGY+IR N+ ICNS+++M
Sbjct: 217 LELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSM 276
Query: 199 YTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
Y++N ++ AR FDS + S SWNSIIS YA N L AW+L Q M
Sbjct: 277 YSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEM 324
Score = 80.1 bits (196), Expect = 2e-13
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Frame = +1
Query: 1 GDLMKGLYM-----FRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALEL 165
G L++G Y FR +Q +G K + +I+ LQA L N GK+IHGYI+R LE
Sbjct: 342 GHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEY 401
Query: 166 NSVICNSLINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+ +C SL++ Y KN + A VF + +WNS+ISGY G + A +L M
Sbjct: 402 DVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQM 460
Score = 76.6 bits (187), Expect = 2e-12
Identities = 42/111 (37%), Positives = 61/111 (54%)
Frame = +1
Query: 10 MKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVICNSL 189
M L F +MQ VK N TI LL+AC L G++IH + +RH + I +L
Sbjct: 521 MDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATAL 580
Query: 190 INMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
I+MY K K++ A VF ++++ T WN ++ GYA G+ EE + LF M
Sbjct: 581 IDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEM 631
Score = 57.0 bits (136), Expect = 2e-06
Identities = 32/114 (28%), Positives = 58/114 (50%)
Frame = +1
Query: 1 GDLMKGLYMFRKMQLSGVKANQFTISKLLQACGKLEALNEGKQIHGYIIRHALELNSVIC 180
GD + L +F+++ GVK + ++ +L+ C L L G ++H +++ ++ +
Sbjct: 110 GDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLS 169
Query: 181 NSLINMYTKNAKVRPARNVFDSMQKLTSISWNSIISGYARNGYLEEAWELFQNM 342
+LIN+Y K + A VFD WN+I+ R+ E+A ELF+ M
Sbjct: 170 CALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRM 223