BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037448
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   124   2e-31
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   130   3e-31
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   115   6e-27
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-24
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...   108   5e-22

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  124 bits (312), Expect(2) = 2e-31
 Identities = 64/137 (46%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
 Frame = -3

Query: 411 FSPSSFLQNQTCNLSF-HNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSH 235
           FSPS    NQ+   +F +  Y K +FSS P+S+VEL    +WS+EL+ ELEK+  S L+H
Sbjct: 38  FSPS--FSNQSYTSAFPYILYGKLFFSSKPNSIVELVLENDWSDELESELEKSS-SVLTH 94

Query: 234 ETVLYVLMKLDQEPLKALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRM 55
           ETV+YVL KLD++P +  +FF WV  +NGF+PS  +YSL+L  L   E++ +FW  +++M
Sbjct: 95  ETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKM 154

Query: 54  SDEGCDIDEDTYSTVLG 4
            ++G  ID++TY T+LG
Sbjct: 155 KEQGFCIDKETYLTILG 171



 Score = 36.2 bits (82), Expect(2) = 2e-31
 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -2

Query: 520 MNRAKGILASLRLMNSFHLTR-----SLNTQVTQCSNLTPFF 410
           MNRAK IL S+R  NSF  T+     SL  QVTQ S  +P F
Sbjct: 1   MNRAKAILFSIRFTNSFRSTQFRRASSLCYQVTQSSRFSPSF 42



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/116 (35%), Positives = 66/116 (56%)
 Frame = -3

Query: 366 FHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLK 187
           ++   Q++        VVEL     WS E++++L +   ++ S   VL+VL +L   PLK
Sbjct: 189 YNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELK-NSFSDNFVLHVLRELRGYPLK 247

Query: 186 ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGCDIDEDTY 19
           AL FF WV    G++ S   Y+++  VLG  ++I EFW +V+ M  +G ++D DTY
Sbjct: 248 ALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTY 303


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  130 bits (326), Expect(2) = 3e-31
 Identities = 64/136 (47%), Positives = 90/136 (66%)
 Frame = -3

Query: 411 FSPSSFLQNQTCNLSFHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHE 232
           F P    +  +    + N ++K Y SS PSS+VEL    +WS EL+ +LE +    L+HE
Sbjct: 35  FFPCFLSREHSYTSDYVNIHKKLYSSSKPSSLVELLSVNDWSPELETQLENSS-PLLTHE 93

Query: 231 TVLYVLMKLDQEPLKALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMS 52
           TV+YVL KLD++P KA DFF WVC RNGFKPS  +YSLML +L  K+++  FW  +++M 
Sbjct: 94  TVIYVLKKLDKDPHKAWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMK 153

Query: 51  DEGCDIDEDTYSTVLG 4
           ++G   DE+TY T+LG
Sbjct: 154 EQGFYTDEETYLTILG 169



 Score = 30.4 bits (67), Expect(2) = 3e-31
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 520 MNRAKGILASLRLMNSFHLTRSLNTQ--VTQCSNLTPFFFS 404
           MNRA+ IL SLRL N    TR   T+  +TQ ++  P F S
Sbjct: 1   MNRARTILVSLRLSNFLLSTRISTTRPFLTQVTHFFPCFLS 41



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 39/116 (33%), Positives = 63/116 (54%)
 Frame = -3

Query: 366 FHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLK 187
           F    +++   S   +VV +    EWS E+++ELE   +  L+   V+ VL +L   PLK
Sbjct: 187 FDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGI-LLTDNFVIRVLKELRNYPLK 245

Query: 186 ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGCDIDEDTY 19
           AL FF W      ++ +   Y+ +  VLG  ++I EFW +V+ M + G ++D DTY
Sbjct: 246 ALQFFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTY 301


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  115 bits (287), Expect(2) = 6e-27
 Identities = 56/136 (41%), Positives = 88/136 (64%)
 Frame = -3

Query: 411 FSPSSFLQNQTCNLSFHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHE 232
           FSPSS++ +Q+    F   +   +FSS P S+++L  T +WSE L+ ELE  +  TL+HE
Sbjct: 30  FSPSSYVSHQSLVSHFTINHPVLFFSSNPQSLLQLVSTNDWSEMLETELETLN-PTLTHE 88

Query: 231 TVLYVLMKLDQEPLKALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMS 52
           TV+YVL +LD++P KA +FF W   +NG   S ++YS++L +    E++  FW  ++ M 
Sbjct: 89  TVVYVLKRLDKQPQKASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMK 148

Query: 51  DEGCDIDEDTYSTVLG 4
           + G  +DE+TY T+LG
Sbjct: 149 ERGFYLDEETYKTILG 164



 Score = 30.8 bits (68), Expect(2) = 6e-27
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -2

Query: 520 MNRAKGILASLRLMNSFHLTRSLNTQVTQCS 428
           M R   I  SLRL NSF  TRS   QVT+ S
Sbjct: 1   MTRRNAIFTSLRLANSFFSTRSRYPQVTRFS 31



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 37/116 (31%), Positives = 62/116 (53%)
 Frame = -3

Query: 366 FHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLK 187
           ++   Q++   S    VV++    +WS ++  +LE+  ++ LS   V+ VL +L   PLK
Sbjct: 182 YNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIA-LSDNFVIRVLKELRNSPLK 240

Query: 186 ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGCDIDEDTY 19
           AL FF WV  R  +  +   Y+ +  VLG  ++I  FW +++ M     +ID DTY
Sbjct: 241 ALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTY 296


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  110 bits (276), Expect(2) = 2e-24
 Identities = 55/130 (42%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
 Frame = -3

Query: 393 LQNQTCNLSFHNTYQKSYFSSTP--SSVVELFRTREWSEELKQELEKAHLSTLSHETVLY 220
           L +++ +L F  T+ K YFS+ P  +S+VEL  T +WS+ L+ +LE     ++ HETVLY
Sbjct: 40  LFDRSHHLRFPITHHKLYFSTKPKPNSIVELLLTNDWSQALELKLEN-RFPSMPHETVLY 98

Query: 219 VLMKLDQEPLKALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGC 40
           V+ +LD+ P KA  FF WVC +  F+PS +VYSL++ +L  K+T+ +FW  ++ M + G 
Sbjct: 99  VIKRLDKNPEKASCFFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGF 158

Query: 39  DIDEDTYSTV 10
            +DE+TY T+
Sbjct: 159 FLDEETYLTI 168



 Score = 26.2 bits (56), Expect(2) = 2e-24
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 520 MNRAKGILASLRLMNSFHLTRSLNT--QVTQCS--NLTPFF 410
           MNR K I +SLR + S   TR L T  QVT  S  N  P F
Sbjct: 1   MNRVKAIASSLRTLESSLATRVLVTRNQVTHFSLHNPLPLF 41



 Score = 71.2 bits (173), Expect = 9e-11
 Identities = 39/116 (33%), Positives = 64/116 (55%)
 Frame = -3

Query: 366 FHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLK 187
           ++   +++   S  S+VV +    EW +E+  EL K  +  LS   V+ VL +L + PLK
Sbjct: 188 YNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQ-LSDNFVIRVLKELRKTPLK 246

Query: 186 ALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGCDIDEDTY 19
           A  FF WV  ++G++     Y+ +  VL   E+I EFW +++ M   G ++D DTY
Sbjct: 247 AYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTY 302


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  108 bits (270), Expect = 5e-22
 Identities = 57/134 (42%), Positives = 84/134 (62%)
 Frame = -3

Query: 408 SPSSFLQNQTCNLSFHNTYQKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHET 229
           +PS  L N   +    N +Q  YFSS P+S+VEL  T +WS+ L+QELEK + S ++HET
Sbjct: 42  TPSPLLDNSH-HFLLPNIHQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPS-MTHET 99

Query: 228 VLYVLMKLDQEPLKALDFFTWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSD 49
           V+YVL +++  P KA  FF WV  +  ++PS ++Y L+L VL  +ETI  FW  ++ M  
Sbjct: 100 VVYVLKRMEANPEKAWCFFNWVSAKEWYRPSSSLYGLILRVLATEETIKLFWITLRTMKT 159

Query: 48  EGCDIDEDTYSTVL 7
           +G   DE+ Y  +L
Sbjct: 160 KGFYFDEEMYFPIL 173



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 34/111 (30%), Positives = 59/111 (53%)
 Frame = -3

Query: 351 QKSYFSSTPSSVVELFRTREWSEELKQELEKAHLSTLSHETVLYVLMKLDQEPLKALDFF 172
           Q++      + VV++    EW +E+   L K  +  +S   V  VL +L   PLKA +FF
Sbjct: 197 QENAMQIVVTKVVDIISGSEWGDEVMSNLAKLEIR-MSDNFVTRVLKELRNCPLKAYEFF 255

Query: 171 TWVCFRNGFKPSFTVYSLMLCVLGCKETINEFWCLVKRMSDEGCDIDEDTY 19
            WV  ++G++     Y+ +  VL   ++I +FW +++ M   G ++D DTY
Sbjct: 256 NWVGKQSGYEHDTVTYNAIARVLASTDSIEKFWSVIEEMKSVGHELDIDTY 306