BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037436
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [S...    56   3e-06
ref|NP_001152059.1| retrotransposon protein [Zea mays] gi|195652...    55   6e-06
gb|AFW70538.1| hypothetical protein ZEAMMB73_690566 [Zea mays]         55   8e-06
tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea m...    54   1e-05

>ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor]
           gi|241927190|gb|EES00335.1| hypothetical protein
           SORBIDRAFT_03g006365 [Sorghum bicolor]
          Length = 369

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
 Frame = +3

Query: 42  FQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQQS---VIVIATSLNAKEIQGKICLSS 209
           F+ I + D    +L +TL+G L + F  E +F Q     V+ I   +  +  +G++ L S
Sbjct: 149 FRNIHLRDLGGKQLNVTLFGDLGSNFDAEQVFKQGQKVPVVAIFAGMLVEHYKGQLFLRS 208

Query: 210 LSATKVYLNLDVADVTAYRNSLEGTHMQIDHL 305
            SA+K YL+LDV +V  +R SL+G +  ID L
Sbjct: 209 TSASKYYLDLDVEEVQKFRASLDGPYKPIDRL 240


>ref|NP_001152059.1| retrotransposon protein [Zea mays] gi|195652219|gb|ACG45577.1|
           retrotransposon protein [Zea mays]
          Length = 525

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +3

Query: 36  TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203
           T+ ++I I + S+M L ITLWG   + F   D++SQ   Q ++++     AK  +G+  L
Sbjct: 160 TIIRDIFIKNTSDMSLKITLWGNQASGFSINDVYSQSNNQPIVILLVGFLAKRFKGQPYL 219

Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296
           SS +A+  Y N  + +   Y N L+   +Q+
Sbjct: 220 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 250


>gb|AFW70538.1| hypothetical protein ZEAMMB73_690566 [Zea mays]
          Length = 428

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +3

Query: 36  TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203
           T+ ++I I + S+M L ITLWG   + F   D+++Q   Q ++++     AK  +G+  L
Sbjct: 65  TIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYL 124

Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296
           SS +A+  Y N  + +   Y N L+   +Q+
Sbjct: 125 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 155


>tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea mays]
          Length = 388

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +3

Query: 36  TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203
           T+ ++I I + S+M L ITLWG   + F   D+++Q   Q ++++     AK  +G+  L
Sbjct: 191 TIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVRFLAKRFKGQPYL 250

Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296
           SS +A+  Y N  + +   Y N L+   +Q+
Sbjct: 251 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 281