BLASTX nr result
ID: Coptis24_contig00037436
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00037436 (369 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [S... 56 3e-06 ref|NP_001152059.1| retrotransposon protein [Zea mays] gi|195652... 55 6e-06 gb|AFW70538.1| hypothetical protein ZEAMMB73_690566 [Zea mays] 55 8e-06 tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea m... 54 1e-05 >ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor] gi|241927190|gb|EES00335.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor] Length = 369 Score = 55.8 bits (133), Expect = 3e-06 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Frame = +3 Query: 42 FQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQQS---VIVIATSLNAKEIQGKICLSS 209 F+ I + D +L +TL+G L + F E +F Q V+ I + + +G++ L S Sbjct: 149 FRNIHLRDLGGKQLNVTLFGDLGSNFDAEQVFKQGQKVPVVAIFAGMLVEHYKGQLFLRS 208 Query: 210 LSATKVYLNLDVADVTAYRNSLEGTHMQIDHL 305 SA+K YL+LDV +V +R SL+G + ID L Sbjct: 209 TSASKYYLDLDVEEVQKFRASLDGPYKPIDRL 240 >ref|NP_001152059.1| retrotransposon protein [Zea mays] gi|195652219|gb|ACG45577.1| retrotransposon protein [Zea mays] Length = 525 Score = 55.1 bits (131), Expect = 6e-06 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Frame = +3 Query: 36 TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203 T+ ++I I + S+M L ITLWG + F D++SQ Q ++++ AK +G+ L Sbjct: 160 TIIRDIFIKNTSDMSLKITLWGNQASGFSINDVYSQSNNQPIVILLVGFLAKRFKGQPYL 219 Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296 SS +A+ Y N + + Y N L+ +Q+ Sbjct: 220 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 250 >gb|AFW70538.1| hypothetical protein ZEAMMB73_690566 [Zea mays] Length = 428 Score = 54.7 bits (130), Expect = 8e-06 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Frame = +3 Query: 36 TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203 T+ ++I I + S+M L ITLWG + F D+++Q Q ++++ AK +G+ L Sbjct: 65 TIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYL 124 Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296 SS +A+ Y N + + Y N L+ +Q+ Sbjct: 125 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 155 >tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea mays] Length = 388 Score = 54.3 bits (129), Expect = 1e-05 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Frame = +3 Query: 36 TVFQEIVIMDKSEMELTITLWGQLTAQFP-EDIFSQ---QSVIVIATSLNAKEIQGKICL 203 T+ ++I I + S+M L ITLWG + F D+++Q Q ++++ AK +G+ L Sbjct: 191 TIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVRFLAKRFKGQPYL 250 Query: 204 SSLSATKVYLNLDVADVTAYRNSLEGTHMQI 296 SS +A+ Y N + + Y N L+ +Q+ Sbjct: 251 SSTTASSWYFNPGIPEAQTYYNRLQNNDLQL 281