BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037342
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28186.3| unnamed protein product [Vitis vinifera]              157   6e-37
ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containi...   157   6e-37
ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
ref|XP_002524479.1| pentatricopeptide repeat-containing protein,...   152   4e-35
ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34

>emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  157 bits (398), Expect = 6e-37
 Identities = 74/112 (66%), Positives = 91/112 (81%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           VF+ M++EG+KLDHVSF+  ++ACGH +  ELGR IH   +K GY+THV VCNVLIS YS
Sbjct: 242 VFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYS 301

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENALSLFIAMRLDGVYPNEVT 340
           KCE +EDA  VFES+I+RNVVSWTT IS++EE+A SLF  MR DGVYPN+VT
Sbjct: 302 KCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVT 353



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           +F  M R+G+  + V+F  ++ A   +  +E G+ IH   +KT + + ++V N LI+MY+
Sbjct: 338 LFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYA 397

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEEN-----ALSLFIAMRLDGVYPNEVT 340
           K E + D+ KVFE +  R ++SW + IS   +N     AL  F++  ++   PNE T
Sbjct: 398 KFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFT 453



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = +2

Query: 38  LDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANKV 217
           +D V+ + V+ AC  +   +LG  IH   + +G+ +HV+V N L++MY K  + + A  V
Sbjct: 78  IDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVV 135

Query: 218 FESMIERNVVSWTTAIS--MNEENALSLFIAMRLDGVYPNEVT 340
           FE++   ++VSW T +S     ++AL+  + M   GV  + VT
Sbjct: 136 FENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVT 178


>ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  157 bits (398), Expect = 6e-37
 Identities = 74/112 (66%), Positives = 91/112 (81%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           VF+ M++EG+KLDHVSF+  ++ACGH +  ELGR IH   +K GY+THV VCNVLIS YS
Sbjct: 265 VFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYS 324

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENALSLFIAMRLDGVYPNEVT 340
           KCE +EDA  VFES+I+RNVVSWTT IS++EE+A SLF  MR DGVYPN+VT
Sbjct: 325 KCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVT 376



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           +F  M R+G+  + V+F  ++ A   +  +E G+ IH   +KT + + ++V N LI+MY+
Sbjct: 361 LFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYA 420

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEEN-----ALSLFIAMRLDGVYPNEVT 340
           K E + D+ KVFE +  R ++SW + IS   +N     AL  F++  ++   PNE T
Sbjct: 421 KFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFT 476



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
 Frame = +2

Query: 29  GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 208
           G+  D V+ ++V+A C        G  +H  ILK G +  V V N LI+MYS+C  + +A
Sbjct: 171 GVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEA 230

Query: 209 NKVFESMIERNVVSWTTAIS--MNEEN----ALSLFIAMRLDGVYPNEVT 340
            +VF+ M  +++VSW   +S    E N    A+ +F+ M  +G+  + V+
Sbjct: 231 RRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVS 280



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
 Frame = +2

Query: 38  LDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDANKV 217
           +D V+ + V+ AC  +   +LG  IH   + +G+ +HV+V N L++MY K  + + A  V
Sbjct: 78  IDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVV 135

Query: 218 FESMIERNVVSWTTAIS--MNEENALSLFIAMRLDGVYPNEVT 340
           FE++   ++VSW T +S     ++AL+  + M   GV  + VT
Sbjct: 136 FENLNNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVT 178


>ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  153 bits (386), Expect = 2e-35
 Identities = 72/112 (64%), Positives = 90/112 (80%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           VF+ MVREG+K D+V  +  ++ CGHER+LELG+ IHC  +KTG+ETH SV NVLIS YS
Sbjct: 260 VFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYS 319

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENALSLFIAMRLDGVYPNEVT 340
           KCE++EDA  VFE + +RNV+SWTT IS+ EE A+SLF  MRLDGVYPN+VT
Sbjct: 320 KCEIIEDAKAVFELINDRNVISWTTMISLYEEGAVSLFNKMRLDGVYPNDVT 371



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
 Frame = +2

Query: 8   FMGMVREGLKLDHVSFSSVVA---ACGHERSLELGRGIHCSILKTGYETHVSVCNVLISM 178
           F    R GL  +   F+ V+A    CG  +   LGR IH  ++ +G+ +H++V N L++M
Sbjct: 61  FKNNFRWGLDGNADEFTLVLALKACCGFPK---LGRQIHGFVISSGFVSHITVSNSLMNM 117

Query: 179 YSKCEVVEDANKVFESMIERNVVSWTTAISMNE--ENALSLFIAMRLDGVYPNEVT 340
           Y K   +E A  VF+++ + ++VSW T +S  E  ENALS  + M L+GV  + VT
Sbjct: 118 YCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEKSENALSFALRMNLNGVKFDSVT 173



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
 Frame = +2

Query: 29  GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 208
           G+K D V++++ ++ C        G  +H   LK G++  V V N L++MYS+ E + DA
Sbjct: 166 GVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDA 225

Query: 209 NKVFESMIERNVVSWTTAIS------MNEENALSLFIAMRLDGV 322
            KVF+ M  R+ VSW+  I+       N   A+ +F+ M  +GV
Sbjct: 226 RKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGV 269



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/95 (31%), Positives = 54/95 (56%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           +F  M  +G+  + V+F  ++ A      +E G  +H   +K  + + ++V N LI+MY+
Sbjct: 356 LFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYA 415

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENAL 289
           K E ++DA++VF  +  R ++SW   IS   +NAL
Sbjct: 416 KFEFMQDASRVFIELPYREIISWNALISGYAQNAL 450


>ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536267|gb|EEF37919.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 576

 Score =  152 bits (383), Expect = 4e-35
 Identities = 72/112 (64%), Positives = 91/112 (81%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           +F+ MVR G+KLDHVSF+S ++ACGHER+LE+GR +H   +K GY  HVSV NVLIS YS
Sbjct: 265 IFIEMVRRGIKLDHVSFTSAISACGHERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYS 324

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENALSLFIAMRLDGVYPNEVT 340
           KCE++EDA  VF++M+ERNVVSWTT IS++EENA+S F  MR D V PN+VT
Sbjct: 325 KCEIIEDAKLVFQNMLERNVVSWTTMISIDEENAVSFFNEMRYDEVDPNDVT 376



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
 Frame = +2

Query: 17  MVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEV 196
           M   G+  D V++++V+A C        G  +H  ILK G +  V V N LI+MYS+   
Sbjct: 167 MNSNGVVFDAVTYTTVLAFCSRIEEFLFGLQLHSCILKVGLDCEVFVGNALITMYSRWGC 226

Query: 197 VEDANKVFESMIERNVVSWTTAISMNEE------NALSLFIAMRLDGVYPNEVT 340
           + +A +VFE M   ++VSW   IS   +       A+S+FI M   G+  + V+
Sbjct: 227 LLEAGRVFEEMQTTDLVSWNAIISGYTQAGIYGLEAISIFIEMVRRGIKLDHVS 280


>ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  149 bits (377), Expect = 2e-34
 Identities = 72/112 (64%), Positives = 90/112 (80%)
 Frame = +2

Query: 5   VFMGMVREGLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYS 184
           +F+ MVR G+ +DHVS +  V+ACGH ++LELGR IH    K GY THVSVCNVL+S YS
Sbjct: 265 LFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYS 324

Query: 185 KCEVVEDANKVFESMIERNVVSWTTAISMNEENALSLFIAMRLDGVYPNEVT 340
           KCEV +DA  VFES+  RNVVSWTT IS++EE+A+SLF AMR++GVYPN+VT
Sbjct: 325 KCEVPKDAKAVFESISNRNVVSWTTMISIDEEDAVSLFNAMRVNGVYPNDVT 376



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 48/80 (60%)
 Frame = +2

Query: 29  GLKLDHVSFSSVVAACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMYSKCEVVEDA 208
           G+  D V+++S +A C  +     G  +H  ++K G    V + N L++MYS+  ++++A
Sbjct: 170 GIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEA 229

Query: 209 NKVFESMIERNVVSWTTAIS 268
            +VF+ M ER++VSW   IS
Sbjct: 230 RRVFDEMPERDLVSWNAMIS 249



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
 Frame = +2

Query: 8   FMGMVREGLKLDHVSFSSVV--AACGHERSLELGRGIHCSILKTGYETHVSVCNVLISMY 181
           ++  V+E +K +  +F SV+   A   + SL  G+  H  +LK G  T   V   L+ MY
Sbjct: 463 YLSAVKE-IKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMY 521

Query: 182 SKCEVVEDANKVFESMIERNVVSWTTAISM-----NEENALSLFIAMRLDGVYPNEVT 340
            K   + ++ +VF   +ER   +WT  IS      + E+ +SL+  M  +G+ P+ +T
Sbjct: 522 GKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSIT 579