BLASTX nr result
ID: Coptis24_contig00037336
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037336
(415 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein lig... 229 1e-58
gb|ACU23737.1| unknown [Glycine max] 228 4e-58
ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinu... 228 4e-58
ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein lig... 225 3e-57
ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|2... 225 3e-57
>ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 485
Score = 229 bits (585), Expect = 1e-58
Identities = 108/138 (78%), Positives = 121/138 (87%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
LDSNGYVYTWGKGYCGALGHGDEI+KTTP LL+S+K LVVQVCARKRKTFVL+D+GSV+
Sbjct: 335 LDSNGYVYTWGKGYCGALGHGDEIEKTTPELLTSLKNQLVVQVCARKRKTFVLVDSGSVY 394
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDN 360
FG M FG LGF DR VSDKV+KP I++ LR H VSQISTGLYHTVV+T+RG IFGFGDN
Sbjct: 395 GFGSMGFGSLGFLDRRVSDKVLKPRILDTLRTHHVSQISTGLYHTVVITSRGQIFGFGDN 454
Query: 361 AREQLGHDLLRTCLKPTE 414
R QLGHD LR+CL+PTE
Sbjct: 455 ERAQLGHDTLRSCLEPTE 472
Score = 62.0 bits (149), Expect = 5e-08
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLL-VVQVCARKRKTFVLMDNGSV 177
L SN VY+ G G CG LG G E + L VV V A +M +G V
Sbjct: 125 LISNSSVYSCGSGLCGVLGQGSETTQCVAFTRIDFPPLARVVHVSASFNHAAFVMQSGEV 184
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGD 357
F G + G D + + +P ++ +L+ Q++ GL TV +T +G ++ G
Sbjct: 185 FTCGDNSSSCCGHRD--TTRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRKGHVYTCGT 242
Query: 358 NAREQLGH 381
N QLGH
Sbjct: 243 NTHGQLGH 250
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
L G+VYT G G LGHGD D+ TP ++ + VVQ+ A + +NG+V+
Sbjct: 231 LTRKGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLSS--VVQIAAGPSYILSVTENGTVY 288
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAH--RVSQISTGLYHTVVVTNRGLIFGFG 354
+FG A LG G ++P I R + ++S G H V + + G ++ +G
Sbjct: 289 SFGSGANFCLG---HGEQHDELQPRAIQKFRRKGIHIVRVSAGDEHAVALDSNGYVYTWG 345
Query: 355 DNAREQLGH 381
LGH
Sbjct: 346 KGYCGALGH 354
>gb|ACU23737.1| unknown [Glycine max]
Length = 485
Score = 228 bits (581), Expect = 4e-58
Identities = 107/138 (77%), Positives = 121/138 (87%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
LDSNGYVYTWGKGYCGALGHGDEI+KTTP LL+S+K LVVQVCARKRKTFVL+D+GSV+
Sbjct: 335 LDSNGYVYTWGKGYCGALGHGDEIEKTTPELLTSLKNQLVVQVCARKRKTFVLVDSGSVY 394
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDN 360
FG M FG LGF DR VS KV+KP I++ LR H VSQISTGLYHTVV+T+RG IFGFGDN
Sbjct: 395 GFGSMGFGSLGFLDRRVSGKVLKPRILDTLRTHHVSQISTGLYHTVVITSRGQIFGFGDN 454
Query: 361 AREQLGHDLLRTCLKPTE 414
R QLGHD+LR+CL+PTE
Sbjct: 455 ERAQLGHDILRSCLEPTE 472
Score = 63.2 bits (152), Expect = 2e-08
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLL-VVQVCARKRKTFVLMDNGSV 177
L SN VY+ G G CG LG G E + L VV V A +M +G V
Sbjct: 125 LISNSSVYSCGSGLCGVLGQGSETTQCVAFTRIDFPPLARVVHVSASFNHAAFVMQSGEV 184
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGD 357
F G + G D + + KP ++ +L+ Q++ GL TV +T +G ++ G
Sbjct: 185 FTCGDNSSSCCGHRD--TTRPIFKPRLVESLKGIPCKQVAAGLNFTVFLTRKGHVYTCGT 242
Query: 358 NAREQLGH 381
N QLGH
Sbjct: 243 NTHGQLGH 250
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
L G+VYT G G LGHGD D+ TP ++ + VVQ+ A + +NG+V+
Sbjct: 231 LTRKGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLSS--VVQIAAGPSYILSVTENGTVY 288
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAH--RVSQISTGLYHTVVVTNRGLIFGFG 354
+FG A LG G ++P I R + ++S G H V + + G ++ +G
Sbjct: 289 SFGSGANFCLG---HGEQHDELQPRAIQKFRRKGIHIVRVSAGDEHAVALDSNGYVYTWG 345
Query: 355 DNAREQLGH 381
LGH
Sbjct: 346 KGYCGALGH 354
>ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis]
gi|223532017|gb|EEF33828.1| Ran GTPase binding protein,
putative [Ricinus communis]
Length = 497
Score = 228 bits (581), Expect = 4e-58
Identities = 106/138 (76%), Positives = 119/138 (86%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
LDS+G+VYTWGKGYCGALGHGDEIDKT P L+S+K L VQVCARKRKTFVL+D G VF
Sbjct: 338 LDSSGFVYTWGKGYCGALGHGDEIDKTLPEPLNSLKSHLAVQVCARKRKTFVLVDGGCVF 397
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDN 360
FGWM FG LGF DRGVSDKVM+P I+++LRAHRVSQISTGLYHTV VT++G +FGFGDN
Sbjct: 398 GFGWMGFGSLGFPDRGVSDKVMRPRILDSLRAHRVSQISTGLYHTVAVTSQGQVFGFGDN 457
Query: 361 AREQLGHDLLRTCLKPTE 414
R QLGHD LR CL+PTE
Sbjct: 458 ERAQLGHDTLRGCLEPTE 475
Score = 63.9 bits (154), Expect = 1e-08
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLL-VVQVCARKRKTFVLMDNGSV 177
L SN VY+ G CG LGHG E + + L VVQV A ++++G V
Sbjct: 125 LISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYILESGEV 184
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGD 357
F G + G D S + +P + L+ Q++ GL TV +T G ++ G
Sbjct: 185 FTCGDNSSFCCGHQD--TSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYSCGT 242
Query: 358 NAREQLGH 381
N QLGH
Sbjct: 243 NTHGQLGH 250
Score = 61.6 bits (148), Expect = 6e-08
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGL-LVVQVCARKRKTFVLMDNGSV 177
L G+VY+ G G LGHGD +D+ TP ++ S +G+ V Q+ A + D+G V
Sbjct: 231 LTRTGHVYSCGTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVV 290
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAH--RVSQISTGLYHTVVVTNRGLIFGF 351
++FG + LG G P I R V ++S G H V + + G ++ +
Sbjct: 291 YSFGSGSNFCLG---HGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTW 347
Query: 352 GDNAREQLGH 381
G LGH
Sbjct: 348 GKGYCGALGH 357
>ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
max]
Length = 485
Score = 225 bits (573), Expect = 3e-57
Identities = 105/138 (76%), Positives = 121/138 (87%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
LDSNG+VYTWGKGYCGALGHGDEI+KTTP LL+S+K L VQVCARKRKTFVL+++GSV+
Sbjct: 335 LDSNGFVYTWGKGYCGALGHGDEIEKTTPELLTSLKNQLAVQVCARKRKTFVLVNSGSVY 394
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDN 360
FG M FG LGF DR VSDKV+KP I++ LRAH VSQISTGLYHTVV+T+RG IFGFGDN
Sbjct: 395 GFGSMGFGSLGFLDRRVSDKVLKPRILDTLRAHHVSQISTGLYHTVVITSRGQIFGFGDN 454
Query: 361 AREQLGHDLLRTCLKPTE 414
R QLGHD LR+CL+PT+
Sbjct: 455 ERAQLGHDTLRSCLEPTQ 472
Score = 60.8 bits (146), Expect = 1e-07
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTP-ALLSSIKGLLVVQVCARKRKTFVLMDNGSV 177
L SN VY+ G G CG LG G E + + S VV V A +M +G V
Sbjct: 125 LISNSSVYSCGSGLCGVLGQGSETTQCVAFTRIDSPPLPRVVHVSASFNHAAFVMQSGEV 184
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGD 357
F G + G D + + +P ++ +L+ Q++ GL TV +T +G ++ G
Sbjct: 185 FTCGDNSSSCCGHRD--TTRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGT 242
Query: 358 NAREQLGH 381
N QLGH
Sbjct: 243 NTHGQLGH 250
Score = 60.1 bits (144), Expect = 2e-07
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
L G+VYT G G LGHGD D+ TP ++ + VVQ+ A + +NG+V+
Sbjct: 231 LTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLSS--VVQIAAGPSYILSVTENGTVY 288
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAH--RVSQISTGLYHTVVVTNRGLIFGFG 354
+FG A LG G ++P I R + ++S G H V + + G ++ +G
Sbjct: 289 SFGSGANFCLG---HGEQHDELQPRPIQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWG 345
Query: 355 DNAREQLGH 381
LGH
Sbjct: 346 KGYCGALGH 354
>ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1|
predicted protein [Populus trichocarpa]
Length = 478
Score = 225 bits (573), Expect = 3e-57
Identities = 103/138 (74%), Positives = 120/138 (86%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGLLVVQVCARKRKTFVLMDNGSVF 180
LDS+G+VY+WGKGYCGALGHGDEIDKT PAL++ +K L VQVCARKRKTFVL+D GSV+
Sbjct: 338 LDSSGFVYSWGKGYCGALGHGDEIDKTLPALVNCLKSHLAVQVCARKRKTFVLVDGGSVY 397
Query: 181 AFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDN 360
FGWM FG LGF DRG+SDKVM+P ++++LRA VSQISTGLYHTVVVTN+G +FGFGDN
Sbjct: 398 GFGWMGFGSLGFPDRGLSDKVMRPRVLDSLRARHVSQISTGLYHTVVVTNQGQMFGFGDN 457
Query: 361 AREQLGHDLLRTCLKPTE 414
R QLGHD LR CL+PTE
Sbjct: 458 ERAQLGHDTLRGCLQPTE 475
Score = 61.2 bits (147), Expect = 8e-08
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = +1
Query: 1 LDSNGYVYTWGKGYCGALGHGDEIDKTTPALLSSIKGL-LVVQVCARKRKTFVLMDNGSV 177
L G +YT G G LGHGD D+ TP ++ ++G+ VVQ+ A + DNG V
Sbjct: 231 LTRQGQLYTCGTNTHGQLGHGDTQDRPTPKIIELLEGVGSVVQIAAGPSYVLAVTDNGVV 290
Query: 178 FAFGWMAFGGLGFSDRGVSDKVMKPHIINNLRAH--RVSQISTGLYHTVVVTNRGLIFGF 351
++FG + LG G +P I R V +S G H V + + G ++ +
Sbjct: 291 YSFGSGSNLCLG---HGEQHDEFRPRAIQTFRRKDIHVVHVSAGDEHAVALDSSGFVYSW 347
Query: 352 GDNAREQLGH 381
G LGH
Sbjct: 348 GKGYCGALGH 357
Score = 58.2 bits (139), Expect = 7e-07
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 19 VYTWGKGYCGALGHGDEIDKTTPALLSSIKGL-LVVQVCARKRKTFVLMDNGSVFAFGWM 195
VY+ G CG LGHG E + L V+QV A ++ +G VF G
Sbjct: 131 VYSCGSSLCGVLGHGAETTQCVAFTRIRFPSLAYVIQVSASHNHAAFVLQSGEVFTCGDN 190
Query: 196 AFGGLGFSDRGVSDKVMKPHIINNLRAHRVSQISTGLYHTVVVTNRGLIFGFGDNAREQL 375
+ G +D + + +P ++ L+ Q++ GL TV +T +G ++ G N QL
Sbjct: 191 SSFCCGHND--TNRPIFRPRLVEALKGVPCKQVAVGLNFTVFLTRQGQLYTCGTNTHGQL 248
Query: 376 GH 381
GH
Sbjct: 249 GH 250