BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037303
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    93   2e-17
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    93   2e-17
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    88   8e-16
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    86   2e-15
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    85   7e-15

>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 42/89 (47%), Positives = 58/89 (65%)
 Frame = +3

Query: 3   PLFAMSTYLLPNSTCEKIDKACRTFWWHGTEDSKSIHTVG*DSICKPKASGGLGLRKAKV 182
           P+  MS+ LLP S  E++DK  R F W  T + +  H +    +C+PKA+GGLGLR +K 
Sbjct: 599 PIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKD 658

Query: 183 MNQAMLAKLSWKALTDKKSIWARTFRAIY 269
           MN+A+LAK+ W+ L DK S+WAR  R  Y
Sbjct: 659 MNRALLAKVGWRLLNDKVSLWARVLRRKY 687


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/89 (48%), Positives = 58/89 (65%)
 Frame = +3

Query: 3   PLFAMSTYLLPNSTCEKIDKACRTFWWHGTEDSKSIHTVG*DSICKPKASGGLGLRKAKV 182
           P+  MS  LLP ST + +D+  RTF W  T + K  H +    ICKPKA GG+GLR A+ 
Sbjct: 664 PVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARD 723

Query: 183 MNQAMLAKLSWKALTDKKSIWARTFRAIY 269
           MN+A++AK+ W+ L DK+S+WAR  R  Y
Sbjct: 724 MNKALVAKVGWRLLQDKESLWARVVRKKY 752


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 38/89 (42%), Positives = 57/89 (64%)
 Frame = +3

Query: 3   PLFAMSTYLLPNSTCEKIDKACRTFWWHGTEDSKSIHTVG*DSICKPKASGGLGLRKAKV 182
           P+  MST  LP ST E +DK  R F    + + K +H V  D +C PK+ GGLG+R +K 
Sbjct: 478 PIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKC 537

Query: 183 MNQAMLAKLSWKALTDKKSIWARTFRAIY 269
           MN+A+++K+ W+ + D+ S+WAR  R+ Y
Sbjct: 538 MNKALVSKVGWRLINDRYSLWARILRSKY 566


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 37/89 (41%), Positives = 56/89 (62%)
 Frame = +3

Query: 3   PLFAMSTYLLPNSTCEKIDKACRTFWWHGTEDSKSIHTVG*DSICKPKASGGLGLRKAKV 182
           P+  MST  LP ST + +DK  R+F W  +   +  H +    +CKP++ GGLG+RKA+ 
Sbjct: 326 PVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQD 385

Query: 183 MNQAMLAKLSWKALTDKKSIWARTFRAIY 269
           MN+A+L+K+ W+ + D  S+WAR  R  Y
Sbjct: 386 MNKALLSKVGWRLIQDYHSLWARIMRCNY 414


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 37/89 (41%), Positives = 54/89 (60%)
 Frame = +3

Query: 3   PLFAMSTYLLPNSTCEKIDKACRTFWWHGTEDSKSIHTVG*DSICKPKASGGLGLRKAKV 182
           P+ +MST LLP S   ++D+  RTF W  T + K  H V    +C PK  GGLG+R AK 
Sbjct: 49  PVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKS 108

Query: 183 MNQAMLAKLSWKALTDKKSIWARTFRAIY 269
           MN+A+++K+ W+ L +K S+W    +  Y
Sbjct: 109 MNRALISKVGWRLLQEKNSLWTLVLQKKY 137