BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037204
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   109   2e-22
ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20
ref|XP_002519113.1| pentatricopeptide repeat-containing protein,...   100   1e-19
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18

>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score =  109 bits (273), Expect = 2e-22
 Identities = 63/130 (48%), Positives = 79/130 (60%), Gaps = 25/130 (19%)
 Frame = +2

Query: 2   LMRTVIRVYD--------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIV 157
           L+RT IRV+D        P ++FE+LVK+Y  C SAPFVFDLL+K CL   +I+ +I IV
Sbjct: 122 LIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACLNSKRIEQSISIV 181

Query: 158 RMLRSRGISMNITTCNMLIRCVFKLRGCDACLVVYRQVF-----------------RDRI 286
           +MLRSRGIS  I+TCN LI  V + RGCDA   +YR+VF                 R R+
Sbjct: 182 KMLRSRGISPTISTCNALIWQVSRGRGCDAGYEIYREVFGSWDDEINEKVRVRVRVRVRV 241

Query: 287 MPNVQTMNTL 316
            PNV T N L
Sbjct: 242 CPNVHTFNAL 251


>ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  102 bits (255), Expect = 3e-20
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 13/108 (12%)
 Frame = +2

Query: 32  PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGISMNITTCNML 211
           PL++FETLVK+Y+ C SAPFVFDLL+K  L   K+D +IEIVRMLRSRGIS  ++T N L
Sbjct: 155 PLKLFETLVKTYKRCGSAPFVFDLLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLNSL 214

Query: 212 IRCVFKLRGCDACLVVYRQVF-------------RDRIMPNVQTMNTL 316
           I  V K +G +    ++R+VF             + R+ PNV T NTL
Sbjct: 215 ILLVSKCQGANVAYAIFREVFGLDCEIEEEHVKLKGRVSPNVHTFNTL 262


>ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
           gi|449472579|ref|XP_004153637.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  102 bits (255), Expect = 3e-20
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 13/108 (12%)
 Frame = +2

Query: 32  PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGISMNITTCNML 211
           PL++FETLVK+Y+ C SAPFVFDLL+K  L   K+D +IEIVRMLRSRGIS  ++T N L
Sbjct: 155 PLKLFETLVKTYKRCGSAPFVFDLLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLNSL 214

Query: 212 IRCVFKLRGCDACLVVYRQVF-------------RDRIMPNVQTMNTL 316
           I  V K +G +    ++R+VF             + R+ PNV T NTL
Sbjct: 215 ILLVSKCQGANVAYAIFREVFGLDCEIEEEHVKLKGRVSPNVHTFNTL 262


>ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541776|gb|EEF43324.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  100 bits (249), Expect = 1e-19
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 9/103 (8%)
 Frame = +2

Query: 35  LEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGISMNITTCNMLI 214
           L+ FE LVK+YR CDSAPFVFDLL+K CL   KID  ++IVR+LRSRGIS  I+TCN L+
Sbjct: 143 LKFFEILVKTYRECDSAPFVFDLLIKSCLELKKIDDGLKIVRLLRSRGISPLISTCNFLV 202

Query: 215 RCVFKLRGCDACLVVYRQVFR---------DRIMPNVQTMNTL 316
             V K +GC A   V+R+VF           ++ PNV T N L
Sbjct: 203 SWVSKCKGCYAGYGVFREVFEVNDNEGKRVIKVRPNVHTFNEL 245


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 56/109 (51%), Positives = 66/109 (60%), Gaps = 14/109 (12%)
 Frame = +2

Query: 32  PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLGNKIDCAIEIVRMLRSRGISMNITTCNML 211
           PL +FETLVK+YR   SAPFVFDLL+K CL   K+D +IEIVRML SRGIS  ++T N L
Sbjct: 142 PLNLFETLVKTYRDSGSAPFVFDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSL 201

Query: 212 IRCVFKLRGCDACLVVYRQVFR--------------DRIMPNVQTMNTL 316
           I  V K RG D    +YR+ FR               R+ PNV T N L
Sbjct: 202 ISRVCKSRGVDEGYAIYREFFRLDEENNEISKRGSGFRVTPNVHTYNDL 250