BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037176
         (277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma af...    56   3e-06
gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]      55   6e-06
gb|ADD31227.1| RNA polymerase alpha subunit protein [Ficus sp. M...    55   6e-06
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac...    55   6e-06
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica...    55   6e-06

>gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 337

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = -1

Query: 82  RMKTPKNAQNGSYPIDIVFMPVRNANH 2
           RMKTPKN+Q+GSYPID VFMPVRNANH
Sbjct: 158 RMKTPKNSQDGSYPIDAVFMPVRNANH 184


>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
          Length = 339

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = -1

Query: 103 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANH 2
           ++  +  RMKTP NAQ GSYPID VFMPVRNANH
Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANH 184


>gb|ADD31227.1| RNA polymerase alpha subunit protein [Ficus sp. Moore 315]
          Length = 323

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = -1

Query: 103 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANH 2
           +K  +  R+KTP N QNGSYPID VFMPVRNANH
Sbjct: 151 IKRDRGYRIKTPNNFQNGSYPIDAVFMPVRNANH 184


>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
           gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
           [Ranunculus macranthus]
          Length = 346

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = -1

Query: 103 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANH 2
           ++  +  RMKTP NAQ GSYPID VFMPVRNANH
Sbjct: 151 IESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANH 184


>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
           gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
           [Nandina domestica]
          Length = 338

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = -1

Query: 103 MKEQKWIRMKTPKNAQNGSYPIDIVFMPVRNANH 2
           ++  +  RMKTP  AQNGSYPID VFMPVRNANH
Sbjct: 151 IERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANH 184