BLASTX nr result
ID: Coptis24_contig00037107
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00037107 (294 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 125 5e-27 ref|XP_002512521.1| pentatricopeptide repeat-containing protein,... 120 9e-26 ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi... 120 9e-26 ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2... 113 2e-23 ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi... 110 9e-23 >emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] Length = 673 Score = 125 bits (313), Expect = 5e-27 Identities = 59/99 (59%), Positives = 78/99 (78%), Gaps = 1/99 (1%) Frame = -1 Query: 294 NNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHI 115 NN+ +AIL + EM+VA+S PNK+T+P++ KAC+DSG + EG+Q+H H++KHGL GDGHI Sbjct: 116 NNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHI 175 Query: 114 RSAGIQMYATCGYTREARQIL-DLSEESDAVCWNAMIDG 1 S+ I+MYA+ G EAR+IL D E DAVCWNAMIDG Sbjct: 176 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214 Score = 63.2 bits (152), Expect = 2e-08 Identities = 31/93 (33%), Positives = 49/93 (52%) Frame = -1 Query: 279 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 100 +A+ F +M P KF PS+ AC + GAL +G IH + ++ +Q DG + ++ + Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 345 Query: 99 QMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 MYA CG A ++ + + WNAMI G Sbjct: 346 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGG 378 >ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 422 Score = 120 bits (302), Expect = 9e-26 Identities = 58/98 (59%), Positives = 74/98 (75%) Frame = -1 Query: 294 NNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHI 115 N++ +AI F+ +M+ AN+ PNKFT+PSL KAC + A EG+Q+H HVIK GL GD HI Sbjct: 107 NDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHI 166 Query: 114 RSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 RSAGIQMYAT G+ AR++LD ESD +C+NAMIDG Sbjct: 167 RSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDG 204 Score = 57.4 bits (137), Expect = 1e-06 Identities = 32/93 (34%), Positives = 47/93 (50%) Frame = -1 Query: 279 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 100 +A+ F M P KF S+ AC + GAL +G IH +V K+ + D + +A + Sbjct: 275 EALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALV 334 Query: 99 QMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 MYA CG A + + +E + WNAMI G Sbjct: 335 DMYAKCGRLDMAWDVFETMKEKEVFTWNAMICG 367 >ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910 isoform 1 [Vitis vinifera] Length = 672 Score = 120 bits (302), Expect = 9e-26 Identities = 57/99 (57%), Positives = 77/99 (77%), Gaps = 1/99 (1%) Frame = -1 Query: 294 NNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHI 115 NN+ +AIL + EM+VA+ PNK+T+P++ KAC+D+G + EG+Q+H H++KHGL GDGHI Sbjct: 115 NNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHI 174 Query: 114 RSAGIQMYATCGYTREARQIL-DLSEESDAVCWNAMIDG 1 S+ I+MYA+ G EAR+IL D E DAVCWNAMIDG Sbjct: 175 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213 Score = 63.2 bits (152), Expect = 2e-08 Identities = 31/93 (33%), Positives = 49/93 (52%) Frame = -1 Query: 279 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 100 +A+ F +M P KF PS+ AC + GAL +G IH + ++ +Q DG + ++ + Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 344 Query: 99 QMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 MYA CG A ++ + + WNAMI G Sbjct: 345 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGG 377 >ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa] Length = 665 Score = 113 bits (282), Expect = 2e-23 Identities = 54/98 (55%), Positives = 72/98 (73%) Frame = -1 Query: 294 NNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHI 115 NN+ +AI + +M++A++ PNKFT+P+LFKACT + A EG+Q+H HVIK GL GD HI Sbjct: 108 NNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHI 167 Query: 114 RSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 RSAGIQMY + G AR++L SD +C+NAMIDG Sbjct: 168 RSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDG 205 >ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] Length = 666 Score = 110 bits (276), Expect = 9e-23 Identities = 54/98 (55%), Positives = 73/98 (74%) Frame = -1 Query: 294 NNDVNQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHI 115 NN + +AI F+ M++ ++ PNKFT+P+LFKAC+ + A+ EG QIH HV+KHG+ D HI Sbjct: 111 NNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169 Query: 114 RSAGIQMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 +SAGIQMYA+ G +AR++ S ESD VCWN MIDG Sbjct: 170 KSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDG 206 Score = 55.5 bits (132), Expect = 5e-06 Identities = 26/93 (27%), Positives = 52/93 (55%) Frame = -1 Query: 279 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 100 +A+ F++M + P +F S+ AC++ GA+ +G +H ++ ++ ++ D + +A + Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336 Query: 99 QMYATCGYTREARQILDLSEESDAVCWNAMIDG 1 MYA CG ++ + +E + WNAMI G Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369