BLASTX nr result
ID: Coptis24_contig00037081
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037081
(436 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16176.3| unnamed protein product [Vitis vinifera] 120 1e-25
ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat... 120 1e-25
ref|XP_002298371.1| predicted protein [Populus trichocarpa] gi|2... 104 6e-21
ref|XP_002532754.1| pentatricopeptide repeat-containing protein,... 96 2e-18
ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat... 86 4e-15
>emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 120 bits (300), Expect = 1e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
+L+EA+ LW +MLN+G+ PDT+AYNFLIYGCCV GEL+KAFELRD+MMRRG+KPN TY
Sbjct: 727 DLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYN 786
Query: 181 ALIHGTCLMRSFS 219
+LIHGTCLM S S
Sbjct: 787 SLIHGTCLMSSVS 799
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
+L+ A +L++ M+ GLKP+ + Y LI G C GEL AF L EM +G+ PN T+
Sbjct: 440 KLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFT 499
Query: 181 ALIHGTC 201
ALI G C
Sbjct: 500 ALISGLC 506
>ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 120 bits (300), Expect = 1e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
+L+EA+ LW +MLN+G+ PDT+AYNFLIYGCCV GEL+KAFELRD+MMRRG+KPN TY
Sbjct: 824 DLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYN 883
Query: 181 ALIHGTCLMRSFS 219
+LIHGTCLM S S
Sbjct: 884 SLIHGTCLMSSVS 896
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
+L+ A +L++ M+ GLKP+ + Y LI G C GEL AF L EM +G+ PN T+
Sbjct: 440 KLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFT 499
Query: 181 ALIHGTC 201
ALI G C
Sbjct: 500 ALISGLC 506
>ref|XP_002298371.1| predicted protein [Populus trichocarpa] gi|222845629|gb|EEE83176.1|
predicted protein [Populus trichocarpa]
Length = 915
Score = 104 bits (260), Expect = 6e-21
Identities = 50/74 (67%), Positives = 58/74 (78%)
Frame = +1
Query: 4 LQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYGA 183
L A+ W+TMLNKGLKPDTLAYNFLIYGCC+ GEL KAFELRD+M+RRG+KPN T+ +
Sbjct: 836 LDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKS 895
Query: 184 LIHGTCLMRSFSFS 225
L HG R FS S
Sbjct: 896 LSHGA--SRKFSIS 907
>ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527505|gb|EEF29631.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 721
Score = 96.3 bits (238), Expect = 2e-18
Identities = 43/57 (75%), Positives = 52/57 (91%)
Frame = +1
Query: 4 LQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VT 174
LQEA+ LW+TML+KGLKPDTLAY+FL++GCC+ GEL KAFELRDEM+RRGM+ N VT
Sbjct: 662 LQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +1
Query: 4 LQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYGA 183
+ EA+ L+ M + + P + YN +I G C +G +S+AF L DEM+ +G P+ TY
Sbjct: 348 MAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRP 407
Query: 184 LIHGTC 201
LI G C
Sbjct: 408 LISGLC 413
>ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 85.5 bits (210), Expect = 4e-15
Identities = 36/51 (70%), Positives = 46/51 (90%)
Frame = +1
Query: 13 ALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN 165
++ LW+TMLN+GL+PD +AYN LIYGCCVNGEL KAFELRD+M+RRG+ P+
Sbjct: 838 SVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
++Q+A L+N M++ G+ P+ + LI G C ++++A EL DE++ R +KP VTY
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544
Query: 181 ALIHGTC 201
LI G C
Sbjct: 545 VLIEGYC 551
Score = 57.8 bits (138), Expect = 9e-07
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
++ EA L++ ++ + +KP + YN LI G C +G++ KAFEL ++M ++G+ P+ TY
Sbjct: 520 KMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYR 579
Query: 181 ALIHGTC 201
LI G C
Sbjct: 580 PLISGLC 586
Score = 55.5 bits (132), Expect = 4e-06
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 ELQEALTLWNTMLNKGLKPDTLAYNFLIYGCCVNGELSKAFELRDEMMRRGMKPN*VTYG 180
++ +A L M KGL PDT Y LI G C G +SKA + D++ ++ +K N + Y
Sbjct: 555 KIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYS 614
Query: 181 ALIHGTC----LMRSFSFS 225
AL+HG C LM + S S
Sbjct: 615 ALLHGYCQEGRLMEALSAS 633