BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037060
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat...   132   2e-29
emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]   132   2e-29
ref|NP_171850.1| pentatricopeptide repeat-containing protein [Ar...   118   4e-25
ref|XP_002892165.1| pentatricopeptide repeat-containing protein ...   115   3e-24
ref|XP_002511392.1| pentatricopeptide repeat-containing protein,...   110   9e-23

>ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera] gi|298205226|emb|CBI17285.3|
           unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  132 bits (333), Expect = 2e-29
 Identities = 65/104 (62%), Positives = 80/104 (76%)
 Frame = -1

Query: 314 LLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIHAHIIKS 135
           LLA+HVN  RH  AL LF  MHA+ +  LD+FVFPLALKSC++ HRP LG +IHAH+ K 
Sbjct: 17  LLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKF 76

Query: 134 SPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMGERDCVSWNSM 3
           S V SNPF++CALVDMYGKCVS++  R LFDE+  R+ V WN+M
Sbjct: 77  SLV-SNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAM 119


>emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  132 bits (333), Expect = 2e-29
 Identities = 65/104 (62%), Positives = 80/104 (76%)
 Frame = -1

Query: 314 LLAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIHAHIIKS 135
           LLA+HVN  RH  AL LF  MHA+ +  LD+FVFPLALKSC++ HRP LG +IHAH+ K 
Sbjct: 17  LLASHVNQGRHHDALSLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKF 76

Query: 134 SPVSSNPFISCALVDMYGKCVSLNLGRKLFDEMGERDCVSWNSM 3
           S V SNPF++CALVDMYGKCVS++  R LFDE+  R+ V WN+M
Sbjct: 77  SLV-SNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAM 119


>ref|NP_171850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180302|sp|Q9LR72.1|PPR7_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g03510 gi|9280666|gb|AAF86535.1|AC002560_28
           F21B7.13 [Arabidopsis thaliana]
           gi|332189459|gb|AEE27580.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 429

 Score =  118 bits (296), Expect = 4e-25
 Identities = 56/103 (54%), Positives = 79/103 (76%)
 Frame = -1

Query: 311 LAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIHAHIIKSS 132
           L+++ N   HE+AL LF +MH++ +L LD+ VF LALKSC++  RP LG S+HAH +KS+
Sbjct: 19  LSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSN 78

Query: 131 PVSSNPFISCALVDMYGKCVSLNLGRKLFDEMGERDCVSWNSM 3
              SNPF+ CAL+DMYGKC+S++  RKLFDE+ +R+ V WN+M
Sbjct: 79  -FLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAM 120


>ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338007|gb|EFH68424.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 429

 Score =  115 bits (289), Expect = 3e-24
 Identities = 55/103 (53%), Positives = 77/103 (74%)
 Frame = -1

Query: 311 LAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIHAHIIKSS 132
           L+++ N   HE+AL LF +MH++ +L LD+ VF LALKSC++   P LG S+HAH +KS+
Sbjct: 19  LSSYANQGFHEQALTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVHAHSVKSN 78

Query: 131 PVSSNPFISCALVDMYGKCVSLNLGRKLFDEMGERDCVSWNSM 3
              SNPF+ CAL+DMYGKC+S+   RKLFDE+ +R+ V WN+M
Sbjct: 79  -FLSNPFVGCALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAM 120


>ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550507|gb|EEF51994.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/103 (53%), Positives = 70/103 (67%)
 Frame = -1

Query: 311 LAAHVNNARHEKALILFTRMHANPSLQLDSFVFPLALKSCSSLHRPFLGISIHAHIIKSS 132
           L +HVN   H  AL LF  M  + +L LD +VFPL LKSCS++  P LG S+HAHI+K  
Sbjct: 34  LTSHVNRGLHHDALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMG 93

Query: 131 PVSSNPFISCALVDMYGKCVSLNLGRKLFDEMGERDCVSWNSM 3
              SNPF++ ALVDMYGKC  +   RKLFDE+ +R+ V WN+M
Sbjct: 94  -FLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAM 135