BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037012
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat...   126   2e-27
ref|XP_002520145.1| pentatricopeptide repeat-containing protein,...   125   3e-27
ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat...   121   7e-26
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...   119   3e-25
ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab...   116   2e-24

>ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  126 bits (317), Expect = 2e-27
 Identities = 61/94 (64%), Positives = 70/94 (74%)
 Frame = -2

Query: 284 YVQCALIHMYAELGFLGLARRVFLEVNGPDLVAQNTMLSACAKSGEVDFARSLFDRMPER 105
           +VQ  L+ MYAELG L     VF     PDLV Q  ML+ACAK G++DFAR +FD MPER
Sbjct: 148 HVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPER 207

Query: 104 DCVTWSAMISGYAQCGESREALSLFHCMQMEGVK 3
           D VTW+AMI+GYAQCG SREAL +FH MQMEGVK
Sbjct: 208 DHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVK 241


>ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540637|gb|EEF42200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 327

 Score =  125 bits (315), Expect = 3e-27
 Identities = 61/94 (64%), Positives = 72/94 (76%)
 Frame = -2

Query: 284 YVQCALIHMYAELGFLGLARRVFLEVNGPDLVAQNTMLSACAKSGEVDFARSLFDRMPER 105
           +VQ  LI MYAELG LG  R+VF  +  PDLV Q  M+SAC+K G+V FAR LFD MP R
Sbjct: 120 HVQSGLIFMYAELGCLGFCRQVFDLIPQPDLVCQTAMVSACSKCGDVGFARELFDSMPHR 179

Query: 104 DCVTWSAMISGYAQCGESREALSLFHCMQMEGVK 3
           D + WSAMI+GYAQCG+SREAL+LFH MQ+E VK
Sbjct: 180 DHIAWSAMIAGYAQCGQSREALALFHLMQLEDVK 213


>ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  121 bits (303), Expect = 7e-26
 Identities = 59/94 (62%), Positives = 70/94 (74%)
 Frame = -2

Query: 284 YVQCALIHMYAELGFLGLARRVFLEVNGPDLVAQNTMLSACAKSGEVDFARSLFDRMPER 105
           +VQ  LI+MYAELG L    RVF  +  PDLV Q  M+SACAK G+V FAR LFD+M  +
Sbjct: 147 HVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHK 206

Query: 104 DCVTWSAMISGYAQCGESREALSLFHCMQMEGVK 3
           D + W+AMISGY QCG+SREALSLF+ MQ EGVK
Sbjct: 207 DPIAWNAMISGYVQCGQSREALSLFNLMQREGVK 240


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  119 bits (298), Expect = 3e-25
 Identities = 58/94 (61%), Positives = 72/94 (76%)
 Frame = -2

Query: 284 YVQCALIHMYAELGFLGLARRVFLEVNGPDLVAQNTMLSACAKSGEVDFARSLFDRMPER 105
           +V+  LI MYAE+  L    RVF  V  PDLV Q TM+SACAK G++ FAR+LFD MP+R
Sbjct: 146 HVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQR 205

Query: 104 DCVTWSAMISGYAQCGESREALSLFHCMQMEGVK 3
           D V+W+AMI+GYAQ G+SREAL+LF  MQM+GVK
Sbjct: 206 DFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVK 239


>ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein
           ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata]
          Length = 1111

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/94 (59%), Positives = 71/94 (75%)
 Frame = -2

Query: 284 YVQCALIHMYAELGFLGLARRVFLEVNGPDLVAQNTMLSACAKSGEVDFARSLFDRMPER 105
           +VQ  LI +YAELG L    +VF  V+ PD V +  M++ACA+ G+V FAR LF+ MPE+
Sbjct: 152 HVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEK 211

Query: 104 DCVTWSAMISGYAQCGESREALSLFHCMQMEGVK 3
           D + W+AMISGYAQ GESREAL+LFH MQ+EGVK
Sbjct: 212 DPIAWNAMISGYAQVGESREALNLFHLMQLEGVK 245