BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036984
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Po...    88   8e-16
dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgar...    81   8e-14
ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4...    79   4e-13
gb|AFK47516.1| unknown [Lotus japonicus]                               78   6e-13
ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7...    78   8e-13

>ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
           gi|222835451|gb|EEE73886.1| light-harvesting complex I
           protein Lhca5 [Populus trichocarpa]
          Length = 266

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 46/90 (51%), Positives = 58/90 (64%)
 Frame = -1

Query: 270 MAVALGSKGFVLRPSFSSTPYATFSSNYRTKFSLFSTISPLRTSHTPRSYRTLVRVQRAT 91
           MAVA+G + FV++P  SS+  +   +  ++ F    T  P + S T  +   +   QR T
Sbjct: 1   MAVAMG-RPFVIQPCLSSSLCSLSKNINKSSFGAAETFLPAKPSSTRCTPVVVHAQQRPT 59

Query: 90  WLPGLDPPSYLDGTLPGDFGFDPLGLGEDP 1
           WLPGLDPP YLDGTL GDFGFDPLGLGEDP
Sbjct: 60  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDP 89


>dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum
           vulgare subsp. vulgare] gi|326509647|dbj|BAJ87039.1|
           predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 257

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 50/93 (53%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
 Frame = -1

Query: 270 MAVALGSKGFVLRPSFSSTPYATFSSNYRTKFSLFSTIS-PLRTSHTPRSYRTLVRV--Q 100
           MA+A  + G V   + SS P A FSS         ST++ P   + +PR+ R  VR   +
Sbjct: 1   MALAANAHGRVC--TLSSRPPAPFSSR--------STVAMPGHHAESPRA-RFAVRAIAE 49

Query: 99  RATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDP 1
           RATWLPGLDPP+YLDGTLPGD+GFDPLGLGE P
Sbjct: 50  RATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQP 82


>ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
           vinifera] gi|302142320|emb|CBI19523.3| unnamed protein
           product [Vitis vinifera]
          Length = 264

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = -1

Query: 270 MAVALGSKGFVLRPSFSSTPYATFSSNYRTKFSLFSTISPLRTSHTPRSYRTLVRVQ-RA 94
           MA+ +G+ GF+++PS S +     S   R    +     P R   +  S+ T+V+ Q R 
Sbjct: 1   MAITVGT-GFLVQPSSSLSLLGRKSC--RPTLDVAYRFLPARPGPSRFSHGTVVQAQQRP 57

Query: 93  TWLPGLDPPSYLDGTLPGDFGFDPLGLGEDP 1
           TWLPGLDPP YL+GTL GDFGFDPLGLGEDP
Sbjct: 58  TWLPGLDPPPYLNGTLAGDFGFDPLGLGEDP 88


>gb|AFK47516.1| unknown [Lotus japonicus]
          Length = 266

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
 Frame = -1

Query: 228 SFSSTPYATFSSNY---RTKFSLFSTISPL--RTSHTPRSYRTLVRVQ-RATWLPGLDPP 67
           S+S  P + F+SN     + +  +S + P   R   TPR  +    +Q R TWLPGLDPP
Sbjct: 8   SYSFQPRSLFNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRPTWLPGLDPP 67

Query: 66  SYLDGTLPGDFGFDPLGLGEDP 1
           +YLDGTL GD+GFDPLGLGEDP
Sbjct: 68  AYLDGTLAGDYGFDPLGLGEDP 89


>ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
           [Brachypodium distachyon]
          Length = 259

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 45/93 (48%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
 Frame = -1

Query: 270 MAVALGSKGFVLRPSFSSTPYATFSSNYRTKFSLFSTISPLRTSHTPRSYRTLVRV---Q 100
           MA+A  + G V+     S P         T FS  +   P      PR+ R + R    +
Sbjct: 1   MALATNAHGRVIHTCSLSKP--------PTAFSRSTAAMPGHHVQPPRA-RVVARASAAE 51

Query: 99  RATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDP 1
           RATWLPGLDPP YLDGTLPGD+GFDPLGLGE+P
Sbjct: 52  RATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEP 84