BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036977
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    95   7e-18
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    89   3e-16
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    87   1e-15
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    87   2e-15
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    85   5e-15

>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 40/106 (37%), Positives = 69/106 (65%)
 Frame = +1

Query: 1   HNLAIYKWPASVIKECEKIIRNFIWSGNPTEKKFMTLNWEKTCKPQEEGGLGLRRLKDIN 180
           H   +Y+WP+S++K  EK IRNF+W+G+ + KK +T+ W   CKP  EGG+GL+RL  +N
Sbjct: 190 HTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLN 249

Query: 181 LAMLMKLSWSLENDNNDWARYMKGKYGVRSDEWTKYKTSTIWPGIK 318
             ML +++W   ++++   R+++ +Y V S      ++S +WP I+
Sbjct: 250 RTMLCRIAWKFYSNDSFVYRFLRSRYLVASG---VPRSSLVWPSIR 292


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 36/86 (41%), Positives = 56/86 (65%)
 Frame = +1

Query: 1   HNLAIYKWPASVIKECEKIIRNFIWSGNPTEKKFMTLNWEKTCKPQEEGGLGLRRLKDIN 180
           H ++IY WP  ++KE EK I+NFIWSG+ T++K +T+ W K C   EEGGLG++ L  +N
Sbjct: 549 HTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLN 608

Query: 181 LAMLMKLSWSLENDNNDWARYMKGKY 258
            A  +K+ W+L   +  WA  ++  +
Sbjct: 609 EATNLKICWNLMQSDEQWANIIRNSW 634


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 35/71 (49%), Positives = 50/71 (70%)
 Frame = +1

Query: 1   HNLAIYKWPASVIKECEKIIRNFIWSGNPTEKKFMTLNWEKTCKPQEEGGLGLRRLKDIN 180
           H + IY WP+ ++KE E   RNFIWSG+ T++K +T+ W+K CKPQ +GGLG+R L  +N
Sbjct: 455 HTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQLN 514

Query: 181 LAMLMKLSWSL 213
            A  +KL W +
Sbjct: 515 AAGNLKLCWDM 525


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
 Frame = +1

Query: 1   HNLAIYKWPASVIKECEKIIRNFIWSGNPTEKKFMTLNWEKTCKPQEEGGLGLRRLKDIN 180
           H ++    P S +   +K+ R+F+W  + T++K   ++W++ CKP+ EGGLG+R+ +D+N
Sbjct: 328 HTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMN 387

Query: 181 LAMLMKLSWSLENDNND-WARYMKGKY---GVRSDEWTKYKT--STIWPGIKWALKE 333
            A+L K+ W L  D +  WAR M+  Y    VR   WTK ++  S+ W  +   ++E
Sbjct: 388 KALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMRE 444


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
 Frame = +1

Query: 1   HNLAIYKWPASVIKECEKIIRNFIWSGNPTEKKFMTLNWEKTCKPQEEGGLGLRRLKDIN 180
           H ++    PAS++++ +K+ RNF+W     ++K   L+W+K C+P+  GGLGLR  KD+N
Sbjct: 601 HTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMN 660

Query: 181 LAMLMKLSWSLENDN-NDWARYMKGKY---GVRSDEW--TKYKTSTIWPGIKWALKE 333
            A+L K+ W L ND  + WAR ++ KY    V    W   K   S+ W  I   L+E
Sbjct: 661 RALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHDSSWLVPKATWSSTWRSIGVGLRE 717