BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036946
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like p...    62   4e-08
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...    58   7e-07
dbj|BAB01155.1| unnamed protein product [Arabidopsis thaliana] g...    57   2e-06
ref|NP_680600.1| uncharacterized protein [Arabidopsis thaliana] ...    56   3e-06
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    55   6e-06

>gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like protein, related
           [Medicago truncatula]
          Length = 196

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
 Frame = -3

Query: 315 ETEEHLFFLCRYAKVVWEGLLMRAGYHKTREQTWQE*LNWILNRSKGKGGKQDALKLIFT 136
           ET  HLFF C YA  VW+G+ MR          W   L +I +      G   A +++ +
Sbjct: 86  ETHSHLFFSCDYADAVWKGV-MRWMNMTVNTSNWHSILQYIQSHCNSNNGMHQAHRMVLS 144

Query: 135 GFIYWVWRERNSRIFEHKASSEQQL-----VEAIMRGVKVK 28
             +Y +W+ERN R F++   S QQL     ++A +RG++ K
Sbjct: 145 ETLYVIWKERNDRKFQNCYRSVQQLLNQIKMDAYIRGLQFK 185


>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
 Frame = -3

Query: 315 ETEEHLFFLCRYAKVVWEG-LLMRAGYHKTREQTWQE*LNWILNRSKGKGGKQDALKLIF 139
           E+ +HLFF C +   +W   LL+++  H+T    W   L+WI N+  GK  ++   +L++
Sbjct: 176 ESRDHLFFSCHFGWEIWSRILLLKSSSHRTGY--WGVELSWIYNQGIGKSVRRKLWRLLW 233

Query: 138 TGFIYWVWRERNSRIFEHKASSEQQLV--EAIMRGVKVK 28
              IY++W+ERN R+  H  S  + LV  + I   +KV+
Sbjct: 234 CATIYFIWQERNHRL--HGGSIREPLVVFQLIRSCIKVR 270


>dbj|BAB01155.1| unnamed protein product [Arabidopsis thaliana]
           gi|49823524|gb|AAT68745.1| hypothetical protein
           At3g17200 [Arabidopsis thaliana]
           gi|60547763|gb|AAX23845.1| hypothetical protein
           At3g17200 [Arabidopsis thaliana]
          Length = 310

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 55/101 (54%)
 Frame = -3

Query: 315 ETEEHLFFLCRYAKVVWEGLLMRAGYHKTREQTWQE*LNWILNRSKGKGGKQDALKLIFT 136
           ET +HLFF+C Y++ VWE +      H+     W++ LN++  R   K  +   +K +F 
Sbjct: 190 ETRDHLFFVCTYSRKVWEDIAKPILQHRF-SLDWKDILNYVCERDSDK-TRNFIIKHVFQ 247

Query: 135 GFIYWVWRERNSRIFEHKASSEQQLVEAIMRGVKVKVHAMK 13
             I+ VW ERN+R    + S   +LV+ I + ++ K+  ++
Sbjct: 248 NTIHSVWGERNARRHGEQPSPVGKLVKMIDKNMRNKLSTIR 288


>ref|NP_680600.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332657078|gb|AEE82478.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 138

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%)
 Frame = -3

Query: 318 AETEEHLFFLCRYAKVVWEGLLMRAGYHKTREQTWQE*LNWILNRSKGKGGKQDALKLIF 139
           AE  EHLFF C  +  VW   + RA    T    + + L W+L+ S+        +KL+F
Sbjct: 19  AEFREHLFFGCGVSFAVWGNFMFRASL--TPPLLFMDCLTWVLSPSRDPNISL-IIKLVF 75

Query: 138 TGFIYWVWRERNSRIFEHKASSEQQLVEAI 49
              IY++W+ERN R+ +H + S   +++ I
Sbjct: 76  QASIYFLWKERNRRLHDHASRSSTAIIKEI 105


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/97 (27%), Positives = 52/97 (53%)
 Frame = -3

Query: 315 ETEEHLFFLCRYAKVVWEGLLMRAGYHKTREQTWQE*LNWILNRSKGKGGKQDALKLIFT 136
           ET +HLFF C+++  +W   ++RAG   T    +   L W+ + S  K      +KL+F 
Sbjct: 204 ETHDHLFFQCQFSNEIWSFFMIRAG--MTPPHLFGPILLWLKSASSSK-NLSLIIKLLFQ 260

Query: 135 GFIYWVWRERNSRIFEHKASSEQQLVEAIMRGVKVKV 25
             +Y +WRERN RI    + +   +++ + + ++ ++
Sbjct: 261 ASVYLIWRERNCRIHTTHSRTPPTIIKEVQQLIRARL 297