BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036404
         (222 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]   103   1e-20
ref|XP_002523294.1| pentatricopeptide repeat-containing protein,...   100   1e-19
ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|NP_197146.1| pentatricopeptide repeat-containing protein [Ar...    88   8e-16

>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
           gi|296089757|emb|CBI39576.3| unnamed protein product
           [Vitis vinifera]
          Length = 586

 Score =  103 bits (258), Expect = 1e-20
 Identities = 51/72 (70%), Positives = 57/72 (79%)
 Frame = -3

Query: 220 FNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNT 41
           F  METL+ QL KSQ+KC ENLF+ VIRNYG A R K AIRTFLRI  FG++ SVRS NT
Sbjct: 151 FEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210

Query: 40  LLNALVQNKRYD 5
           LLN LVQNKR+D
Sbjct: 211 LLNTLVQNKRFD 222


>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  103 bits (258), Expect = 1e-20
 Identities = 51/72 (70%), Positives = 57/72 (79%)
 Frame = -3

Query: 220 FNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNT 41
           F  METL+ QL KSQ+KC ENLF+ VIRNYG A R K AIRTFLRI  FG++ SVRS NT
Sbjct: 151 FEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210

Query: 40  LLNALVQNKRYD 5
           LLN LVQNKR+D
Sbjct: 211 LLNTLVQNKRFD 222


>ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537382|gb|EEF39010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 544

 Score =  100 bits (250), Expect = 1e-19
 Identities = 46/72 (63%), Positives = 59/72 (81%)
 Frame = -3

Query: 220 FNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNT 41
           F  +E L+  L KSQ+KC EN+F+ VIRNYG+A +  FA+RTF+RI++F ++RSVRSLNT
Sbjct: 111 FGPVELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNT 170

Query: 40  LLNALVQNKRYD 5
           LLNA VQNKRYD
Sbjct: 171 LLNAFVQNKRYD 182


>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
           gi|449492939|ref|XP_004159147.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 46/73 (63%), Positives = 61/73 (83%)
 Frame = -3

Query: 220 FNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNT 41
           F  +E+L+L+L+ S + CSE+LF+ VIR+YG+ASR K A++TFLRI+ FG+ RSVRSLNT
Sbjct: 102 FEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNT 161

Query: 40  LLNALVQNKRYDS 2
           LLNALVQN R+ S
Sbjct: 162 LLNALVQNNRFSS 174


>ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
           gi|9759124|dbj|BAB09609.1| salt-inducible protein-like
           [Arabidopsis thaliana] gi|332004907|gb|AED92290.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 535

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 41/74 (55%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
 Frame = -3

Query: 220 FNEMETLMLQLKKSQ--LKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSL 47
           F+ +E+LM  L+ S   +KC ENLF+ ++RNYG+A R + ++R FLRI +FG++RSVRSL
Sbjct: 99  FDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSL 158

Query: 46  NTLLNALVQNKRYD 5
           NTLLN L+QN+R+D
Sbjct: 159 NTLLNVLIQNQRFD 172