BLASTX nr result

ID: Coptis24_contig00035444 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035444
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42
ref|XP_002867333.1| pentatricopeptide repeat-containing protein ...   163   1e-38
emb|CBI36552.3| unnamed protein product [Vitis vinifera]              160   1e-37
ref|NP_194799.1| pentatricopeptide repeat-containing protein [Ar...   159   2e-37
ref|XP_002533229.1| pentatricopeptide repeat-containing protein,...   155   2e-36

>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  176 bits (445), Expect = 2e-42
 Identities = 87/113 (76%), Positives = 101/113 (89%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ
Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
             EV+PNPVTVTSILSACAQLGAL  GKWVH+L+ RE+F+SNIFVSTAL+DMY
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMY 454



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/98 (40%), Positives = 59/98 (60%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           N  V TALI +Y++   I  A++LF   PE+N V+WNAMIS Y  +G   +A+ LF +M 
Sbjct: 443 NIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEML 502

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVREN 48
           +S V P  VT  S+L AC+  G +R G  +   +V ++
Sbjct: 503 HSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDH 540



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/110 (37%), Positives = 59/110 (53%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V T L  +YS+  EIE+AR LF    + +LVS+NAMIS Y  N  TE ++ LFK++  S 
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            K N  ++  ++      G L   + +H    +    SN  VSTAL  +Y
Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/110 (29%), Positives = 59/110 (53%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V +A++  Y + + + +AR++F+G  E + V WN M+S   +N   ++AI +F  M    
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
           +  +  TV ++L   A+L  L  G  +  L ++  F S+ +V T L  +Y
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252


>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313169|gb|EFH43592.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 792

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/113 (70%), Positives = 97/113 (85%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           +TSV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ
Sbjct: 353 HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
           NSE  PNPVT+T ILSACAQLGAL  GKWVH+LV   +F+S+I+VSTAL+ MY
Sbjct: 413 NSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
 Frame = -1

Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174
           DF +S  V TALI +Y++   I  AR+LF+  P++N V+WN MIS Y  +G  ++A+ +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIF 509

Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6
            +M NS + P PVT   +L AC+  G ++ G  + + ++ R  F+ ++     +VD+
Sbjct: 510 SEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDI 566



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
 Frame = -1

Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144
           ++ +Y +   +E AR++F+  PE++ + WN MIS Y +N +  ++I +F+ + N S  + 
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
           +  T+  IL A A+L  LR G  +H L  +    S+ +V T  + +Y
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 38/110 (34%), Positives = 60/110 (54%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V T  I++YS+  +I+ A  LF      ++V++NAMI  Y  NG TE +++LFK++  S 
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            K    T+ S++      G L     +H   ++ NF S+  VSTAL  +Y
Sbjct: 318 AKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVY 364


>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  160 bits (404), Expect = 1e-37
 Identities = 79/105 (75%), Positives = 93/105 (88%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ
Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFV 27
             EV+PNPVTVTSILSACAQLGAL  GKWVH+L+ RE+F+SNIF+
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFM 446



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/110 (37%), Positives = 59/110 (53%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V T L  +YS+  EIE+AR LF    + +LVS+NAMIS Y  N  TE ++ LFK++  S 
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            K N  ++  ++      G L   + +H    +    SN  VSTAL  +Y
Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/110 (29%), Positives = 59/110 (53%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V +A++  Y + + + +AR++F+G  E + V WN M+S   +N   ++AI +F  M    
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
           +  +  TV ++L   A+L  L  G  +  L ++  F S+ +V T L  +Y
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252


>ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
           gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis
           thaliana] gi|7269971|emb|CAB79788.1| putative protein
           [Arabidopsis thaliana] gi|332660398|gb|AEE85798.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 792

 Score =  159 bits (402), Expect = 2e-37
 Identities = 78/113 (69%), Positives = 95/113 (84%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           + SV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            SE  PNPVT+T ILSACAQLGAL  GKWVH+LV   +F+S+I+VSTAL+ MY
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
 Frame = -1

Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174
           DF +S  V TALI +Y++   I  AR+LF+   ++N V+WN MIS Y  +G  ++A+ +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF 509

Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6
            +M NS + P PVT   +L AC+  G ++ G  + + ++ R  F+ ++     +VD+
Sbjct: 510 YEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDI 566



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
 Frame = -1

Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144
           ++ +Y +   +E AR++F+  PE++ + WN MIS Y +N +  ++I +F+ + N S  + 
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
           +  T+  IL A A+L  LR G  +H L  +    S+ +V T  + +Y
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 36/110 (32%), Positives = 60/110 (54%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
           V T  I++YS+  +I+    LF    + ++V++NAMI  Y  NG TE +++LFK++  S 
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            +    T+ S++      G L     +H   ++ NF S+  VSTAL  +Y
Sbjct: 318 ARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVY 364


>ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526949|gb|EEF29150.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 575

 Score =  155 bits (393), Expect = 2e-36
 Identities = 75/113 (66%), Positives = 94/113 (83%)
 Frame = -1

Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
           ++SV TAL TVYSRLNE+E+ARQLF+ + E+ L SWNAMI+ Y QNG TEKAI+LF++MQ
Sbjct: 352 HSSVATALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQ 411

Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
              + PNPVTVTSILSACAQLGAL  GKW+H LV  ++F+ N++VSTAL+DMY
Sbjct: 412 MYNISPNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMY 464



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 39/89 (43%), Positives = 59/89 (66%)
 Frame = -1

Query: 347 DFNTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQ 168
           ++N  V TALI +Y++   I  AR+LF+  PE+N V+WNA+IS Y  +GL ++A+ LF +
Sbjct: 451 EYNVYVSTALIDMYAKCGSILEARRLFDSMPEKNEVTWNAIISGYGLHGLGQEALKLFYE 510

Query: 167 MQNSEVKPNPVTVTSILSACAQLGALRFG 81
           M N  ++P  VT  S+L AC+  G +R G
Sbjct: 511 MLNCGIQPTRVTFLSVLYACSHAGLVREG 539



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/111 (32%), Positives = 61/111 (54%)
 Frame = -1

Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156
           SV T LI++YS+  ++++A  LF     ++L+S+NAMIS    NG TE ++ LF++  +S
Sbjct: 253 SVVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDS 312

Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
             K N  ++  ++      G L     +H   V+    S+  V+TAL  +Y
Sbjct: 313 GEKVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVY 363



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
 Frame = -1

Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQM-QNS 156
           V +AL+ +Y +L+  + A ++F+  PE + + +N MIS   +    E +I LFK M   +
Sbjct: 152 VGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKYMISGN 211

Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
             + +  TV ++L A A+L  LR G  +  L ++  F S+I V T L+ +Y
Sbjct: 212 GPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVTGLISLY 262



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
 Frame = -1

Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156
           +V T L       N    A  LF   P+ +L  +N +I  ++ N     AI+LF  ++ S
Sbjct: 49  AVATKLTHKLFNFNATSHASALFFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLRKS 108

Query: 155 -EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
            ++ P+  T   ++SA    G  + G  +H  V+ +   S++FV +ALVDMY
Sbjct: 109 TDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALVDMY 160


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