BLASTX nr result
ID: Coptis24_contig00035444
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00035444
(350 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 176 2e-42
ref|XP_002867333.1| pentatricopeptide repeat-containing protein ... 163 1e-38
emb|CBI36552.3| unnamed protein product [Vitis vinifera] 160 1e-37
ref|NP_194799.1| pentatricopeptide repeat-containing protein [Ar... 159 2e-37
ref|XP_002533229.1| pentatricopeptide repeat-containing protein,... 155 2e-36
>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 176 bits (445), Expect = 2e-42
Identities = 87/113 (76%), Positives = 101/113 (89%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ
Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
EV+PNPVTVTSILSACAQLGAL GKWVH+L+ RE+F+SNIFVSTAL+DMY
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMY 454
Score = 78.2 bits (191), Expect = 7e-13
Identities = 40/98 (40%), Positives = 59/98 (60%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
N V TALI +Y++ I A++LF PE+N V+WNAMIS Y +G +A+ LF +M
Sbjct: 443 NIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEML 502
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVREN 48
+S V P VT S+L AC+ G +R G + +V ++
Sbjct: 503 HSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDH 540
Score = 71.2 bits (173), Expect = 8e-11
Identities = 41/110 (37%), Positives = 59/110 (53%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V T L +YS+ EIE+AR LF + +LVS+NAMIS Y N TE ++ LFK++ S
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
K N ++ ++ G L + +H + SN VSTAL +Y
Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/110 (29%), Positives = 59/110 (53%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V +A++ Y + + + +AR++F+G E + V WN M+S +N ++AI +F M
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ + TV ++L A+L L G + L ++ F S+ +V T L +Y
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252
>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297313169|gb|EFH43592.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 792
Score = 163 bits (413), Expect = 1e-38
Identities = 80/113 (70%), Positives = 97/113 (85%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
+TSV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ
Sbjct: 353 HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
NSE PNPVT+T ILSACAQLGAL GKWVH+LV +F+S+I+VSTAL+ MY
Sbjct: 413 NSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465
Score = 79.0 bits (193), Expect = 4e-13
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Frame = -1
Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174
DF +S V TALI +Y++ I AR+LF+ P++N V+WN MIS Y +G ++A+ +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIF 509
Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6
+M NS + P PVT +L AC+ G ++ G + + ++ R F+ ++ +VD+
Sbjct: 510 SEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDI 566
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = -1
Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144
++ +Y + +E AR++F+ PE++ + WN MIS Y +N + ++I +F+ + N S +
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ T+ IL A A+L LR G +H L + S+ +V T + +Y
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266
Score = 62.4 bits (150), Expect = 4e-08
Identities = 38/110 (34%), Positives = 60/110 (54%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V T I++YS+ +I+ A LF ++V++NAMI Y NG TE +++LFK++ S
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
K T+ S++ G L +H ++ NF S+ VSTAL +Y
Sbjct: 318 AKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVY 364
>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 160 bits (404), Expect = 1e-37
Identities = 79/105 (75%), Positives = 93/105 (88%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ
Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFV 27
EV+PNPVTVTSILSACAQLGAL GKWVH+L+ RE+F+SNIF+
Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFM 446
Score = 71.2 bits (173), Expect = 8e-11
Identities = 41/110 (37%), Positives = 59/110 (53%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V T L +YS+ EIE+AR LF + +LVS+NAMIS Y N TE ++ LFK++ S
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
K N ++ ++ G L + +H + SN VSTAL +Y
Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/110 (29%), Positives = 59/110 (53%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V +A++ Y + + + +AR++F+G E + V WN M+S +N ++AI +F M
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ + TV ++L A+L L G + L ++ F S+ +V T L +Y
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252
>ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis
thaliana] gi|7269971|emb|CAB79788.1| putative protein
[Arabidopsis thaliana] gi|332660398|gb|AEE85798.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 792
Score = 159 bits (402), Expect = 2e-37
Identities = 78/113 (69%), Positives = 95/113 (84%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
+ SV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
SE PNPVT+T ILSACAQLGAL GKWVH+LV +F+S+I+VSTAL+ MY
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465
Score = 74.7 bits (182), Expect = 7e-12
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Frame = -1
Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174
DF +S V TALI +Y++ I AR+LF+ ++N V+WN MIS Y +G ++A+ +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF 509
Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6
+M NS + P PVT +L AC+ G ++ G + + ++ R F+ ++ +VD+
Sbjct: 510 YEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDI 566
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = -1
Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144
++ +Y + +E AR++F+ PE++ + WN MIS Y +N + ++I +F+ + N S +
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ T+ IL A A+L LR G +H L + S+ +V T + +Y
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266
Score = 60.5 bits (145), Expect = 1e-07
Identities = 36/110 (32%), Positives = 60/110 (54%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153
V T I++YS+ +I+ LF + ++V++NAMI Y NG TE +++LFK++ S
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317
Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ T+ S++ G L +H ++ NF S+ VSTAL +Y
Sbjct: 318 ARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVY 364
>ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526949|gb|EEF29150.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 575
Score = 155 bits (393), Expect = 2e-36
Identities = 75/113 (66%), Positives = 94/113 (83%)
Frame = -1
Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162
++SV TAL TVYSRLNE+E+ARQLF+ + E+ L SWNAMI+ Y QNG TEKAI+LF++MQ
Sbjct: 352 HSSVATALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQ 411
Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ PNPVTVTSILSACAQLGAL GKW+H LV ++F+ N++VSTAL+DMY
Sbjct: 412 MYNISPNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMY 464
Score = 80.9 bits (198), Expect = 1e-13
Identities = 39/89 (43%), Positives = 59/89 (66%)
Frame = -1
Query: 347 DFNTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQ 168
++N V TALI +Y++ I AR+LF+ PE+N V+WNA+IS Y +GL ++A+ LF +
Sbjct: 451 EYNVYVSTALIDMYAKCGSILEARRLFDSMPEKNEVTWNAIISGYGLHGLGQEALKLFYE 510
Query: 167 MQNSEVKPNPVTVTSILSACAQLGALRFG 81
M N ++P VT S+L AC+ G +R G
Sbjct: 511 MLNCGIQPTRVTFLSVLYACSHAGLVREG 539
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/111 (32%), Positives = 61/111 (54%)
Frame = -1
Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156
SV T LI++YS+ ++++A LF ++L+S+NAMIS NG TE ++ LF++ +S
Sbjct: 253 SVVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDS 312
Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
K N ++ ++ G L +H V+ S+ V+TAL +Y
Sbjct: 313 GEKVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVY 363
Score = 57.4 bits (137), Expect = 1e-06
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = -1
Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQM-QNS 156
V +AL+ +Y +L+ + A ++F+ PE + + +N MIS + E +I LFK M +
Sbjct: 152 VGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKYMISGN 211
Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
+ + TV ++L A A+L LR G + L ++ F S+I V T L+ +Y
Sbjct: 212 GPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVTGLISLY 262
Score = 55.8 bits (133), Expect = 4e-06
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = -1
Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156
+V T L N A LF P+ +L +N +I ++ N AI+LF ++ S
Sbjct: 49 AVATKLTHKLFNFNATSHASALFFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLRKS 108
Query: 155 -EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3
++ P+ T ++SA G + G +H V+ + S++FV +ALVDMY
Sbjct: 109 TDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALVDMY 160