BLASTX nr result
ID: Coptis24_contig00035444
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00035444 (350 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 176 2e-42 ref|XP_002867333.1| pentatricopeptide repeat-containing protein ... 163 1e-38 emb|CBI36552.3| unnamed protein product [Vitis vinifera] 160 1e-37 ref|NP_194799.1| pentatricopeptide repeat-containing protein [Ar... 159 2e-37 ref|XP_002533229.1| pentatricopeptide repeat-containing protein,... 155 2e-36 >ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Vitis vinifera] Length = 781 Score = 176 bits (445), Expect = 2e-42 Identities = 87/113 (76%), Positives = 101/113 (89%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 EV+PNPVTVTSILSACAQLGAL GKWVH+L+ RE+F+SNIFVSTAL+DMY Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMY 454 Score = 78.2 bits (191), Expect = 7e-13 Identities = 40/98 (40%), Positives = 59/98 (60%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 N V TALI +Y++ I A++LF PE+N V+WNAMIS Y +G +A+ LF +M Sbjct: 443 NIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEML 502 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVREN 48 +S V P VT S+L AC+ G +R G + +V ++ Sbjct: 503 HSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDH 540 Score = 71.2 bits (173), Expect = 8e-11 Identities = 41/110 (37%), Positives = 59/110 (53%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V T L +YS+ EIE+AR LF + +LVS+NAMIS Y N TE ++ LFK++ S Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 K N ++ ++ G L + +H + SN VSTAL +Y Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353 Score = 63.5 bits (153), Expect = 2e-08 Identities = 32/110 (29%), Positives = 59/110 (53%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V +A++ Y + + + +AR++F+G E + V WN M+S +N ++AI +F M Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + + TV ++L A+L L G + L ++ F S+ +V T L +Y Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252 >ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 792 Score = 163 bits (413), Expect = 1e-38 Identities = 80/113 (70%), Positives = 97/113 (85%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 +TSV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ Sbjct: 353 HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 NSE PNPVT+T ILSACAQLGAL GKWVH+LV +F+S+I+VSTAL+ MY Sbjct: 413 NSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465 Score = 79.0 bits (193), Expect = 4e-13 Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Frame = -1 Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174 DF +S V TALI +Y++ I AR+LF+ P++N V+WN MIS Y +G ++A+ +F Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIF 509 Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6 +M NS + P PVT +L AC+ G ++ G + + ++ R F+ ++ +VD+ Sbjct: 510 SEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDI 566 Score = 65.9 bits (159), Expect = 3e-09 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%) Frame = -1 Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144 ++ +Y + +E AR++F+ PE++ + WN MIS Y +N + ++I +F+ + N S + Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219 Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + T+ IL A A+L LR G +H L + S+ +V T + +Y Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266 Score = 62.4 bits (150), Expect = 4e-08 Identities = 38/110 (34%), Positives = 60/110 (54%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V T I++YS+ +I+ A LF ++V++NAMI Y NG TE +++LFK++ S Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 K T+ S++ G L +H ++ NF S+ VSTAL +Y Sbjct: 318 AKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVY 364 >emb|CBI36552.3| unnamed protein product [Vitis vinifera] Length = 726 Score = 160 bits (404), Expect = 1e-37 Identities = 79/105 (75%), Positives = 93/105 (88%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 N+SV TAL TVYSRLNEIESAR LF+ + E++L SWNAMIS YAQNGLTEKAI+LF++MQ Sbjct: 342 NSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ 401 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFV 27 EV+PNPVTVTSILSACAQLGAL GKWVH+L+ RE+F+SNIF+ Sbjct: 402 KCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFM 446 Score = 71.2 bits (173), Expect = 8e-11 Identities = 41/110 (37%), Positives = 59/110 (53%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V T L +YS+ EIE+AR LF + +LVS+NAMIS Y N TE ++ LFK++ S Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 K N ++ ++ G L + +H + SN VSTAL +Y Sbjct: 304 EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVY 353 Score = 63.5 bits (153), Expect = 2e-08 Identities = 32/110 (29%), Positives = 59/110 (53%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V +A++ Y + + + +AR++F+G E + V WN M+S +N ++AI +F M Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + + TV ++L A+L L G + L ++ F S+ +V T L +Y Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252 >ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g30700; AltName: Full=Protein DYW9 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana] gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana] gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 792 Score = 159 bits (402), Expect = 2e-37 Identities = 78/113 (69%), Positives = 95/113 (84%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 + SV TAL TVYS+LNEIESAR+LF+ +PE++L SWNAMIS Y QNGLTE AI+LF++MQ Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 SE PNPVT+T ILSACAQLGAL GKWVH+LV +F+S+I+VSTAL+ MY Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465 Score = 74.7 bits (182), Expect = 7e-12 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Frame = -1 Query: 347 DFNTS--VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALF 174 DF +S V TALI +Y++ I AR+LF+ ++N V+WN MIS Y +G ++A+ +F Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF 509 Query: 173 KQMQNSEVKPNPVTVTSILSACAQLGALRFGKWV-HELVVRENFQSNIFVSTALVDM 6 +M NS + P PVT +L AC+ G ++ G + + ++ R F+ ++ +VD+ Sbjct: 510 YEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDI 566 Score = 65.9 bits (159), Expect = 3e-09 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%) Frame = -1 Query: 320 LITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQN-SEVKP 144 ++ +Y + +E AR++F+ PE++ + WN MIS Y +N + ++I +F+ + N S + Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219 Query: 143 NPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + T+ IL A A+L LR G +H L + S+ +V T + +Y Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266 Score = 60.5 bits (145), Expect = 1e-07 Identities = 36/110 (32%), Positives = 60/110 (54%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNSE 153 V T I++YS+ +I+ LF + ++V++NAMI Y NG TE +++LFK++ S Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317 Query: 152 VKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + T+ S++ G L +H ++ NF S+ VSTAL +Y Sbjct: 318 ARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVY 364 >ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 575 Score = 155 bits (393), Expect = 2e-36 Identities = 75/113 (66%), Positives = 94/113 (83%) Frame = -1 Query: 341 NTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQ 162 ++SV TAL TVYSRLNE+E+ARQLF+ + E+ L SWNAMI+ Y QNG TEKAI+LF++MQ Sbjct: 352 HSSVATALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQ 411 Query: 161 NSEVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + PNPVTVTSILSACAQLGAL GKW+H LV ++F+ N++VSTAL+DMY Sbjct: 412 MYNISPNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMY 464 Score = 80.9 bits (198), Expect = 1e-13 Identities = 39/89 (43%), Positives = 59/89 (66%) Frame = -1 Query: 347 DFNTSVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQ 168 ++N V TALI +Y++ I AR+LF+ PE+N V+WNA+IS Y +GL ++A+ LF + Sbjct: 451 EYNVYVSTALIDMYAKCGSILEARRLFDSMPEKNEVTWNAIISGYGLHGLGQEALKLFYE 510 Query: 167 MQNSEVKPNPVTVTSILSACAQLGALRFG 81 M N ++P VT S+L AC+ G +R G Sbjct: 511 MLNCGIQPTRVTFLSVLYACSHAGLVREG 539 Score = 65.9 bits (159), Expect = 3e-09 Identities = 36/111 (32%), Positives = 61/111 (54%) Frame = -1 Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156 SV T LI++YS+ ++++A LF ++L+S+NAMIS NG TE ++ LF++ +S Sbjct: 253 SVVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDS 312 Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 K N ++ ++ G L +H V+ S+ V+TAL +Y Sbjct: 313 GEKVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVY 363 Score = 57.4 bits (137), Expect = 1e-06 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Frame = -1 Query: 332 VCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQM-QNS 156 V +AL+ +Y +L+ + A ++F+ PE + + +N MIS + E +I LFK M + Sbjct: 152 VGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKYMISGN 211 Query: 155 EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 + + TV ++L A A+L LR G + L ++ F S+I V T L+ +Y Sbjct: 212 GPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVTGLISLY 262 Score = 55.8 bits (133), Expect = 4e-06 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Frame = -1 Query: 335 SVCTALITVYSRLNEIESARQLFEGAPEENLVSWNAMISCYAQNGLTEKAIALFKQMQNS 156 +V T L N A LF P+ +L +N +I ++ N AI+LF ++ S Sbjct: 49 AVATKLTHKLFNFNATSHASALFFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLRKS 108 Query: 155 -EVKPNPVTVTSILSACAQLGALRFGKWVHELVVRENFQSNIFVSTALVDMY 3 ++ P+ T ++SA G + G +H V+ + S++FV +ALVDMY Sbjct: 109 TDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALVDMY 160