BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035337
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   304   9e-81
ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containi...   293   2e-77
ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   291   8e-77
ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containi...   290   2e-76
ref|XP_003625566.1| Pentatricopeptide repeat-containing protein ...   283   2e-74

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
           gi|297741486|emb|CBI32618.3| unnamed protein product
           [Vitis vinifera]
          Length = 842

 Score =  304 bits (779), Expect = 9e-81
 Identities = 150/223 (67%), Positives = 174/223 (78%)
 Frame = -1

Query: 671 KGFLKPSEIFDLCLGKRDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSK 492
           K  L+P +   +C+ KR+P+ AVRYA +LPHA   F +II  FGKK DL SAL A+E SK
Sbjct: 178 KKLLEPLDFIKICVNKRNPNLAVRYACILPHAQILFCTIIHEFGKKRDLGSALTAFEASK 237

Query: 491 SKTDSPNMYVCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYT 312
            K   PNMY  RTMIDVCGLC ++ KSRYIYE LLAQK+ PN Y FNSLMNVN HDLSYT
Sbjct: 238 QKLIGPNMYCYRTMIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNVNVHDLSYT 297

Query: 311 LNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYEEVRSIALTGALKLDVITYST 132
            N+ K+M+ LGV  D+ASYN+LLK CC AGRVDLAQ+IY EV+++   G LKLDV TYST
Sbjct: 298 FNVYKNMQNLGVTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYST 357

Query: 131 IIKVLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISACANA 3
           IIKV ADAK+WQMALKIKE MLSAGV PN VTWS+LIS+CANA
Sbjct: 358 IIKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANA 400



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 33/119 (27%), Positives = 60/119 (50%)
 Frame = -1

Query: 371 PNTYFFNSLMNVNAHDLSYTLNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYE 192
           P T  +N LM     D      +   MK  G++P+  S+++L+ +C   G +  A  I +
Sbjct: 499 PTTTTYNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILK 558

Query: 191 EVRSIALTGALKLDVITYSTIIKVLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISA 15
            +R       +K DV+ Y+T IK   ++K  ++A  +   M    + PN+VT+++L+ A
Sbjct: 559 TMRE----AGIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRA 613


>ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  293 bits (750), Expect = 2e-77
 Identities = 141/220 (64%), Positives = 174/220 (79%)
 Frame = -1

Query: 662 LKPSEIFDLCLGKRDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKT 483
           +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DLKSA IAY  SK+  
Sbjct: 197 MKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTESKANM 256

Query: 482 DSPNMYVCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLNI 303
           +  NMY+ RT+IDVCGLCG++ KSR IY+ L+ Q VIPN + FNSLMNVNAHDL+YT  +
Sbjct: 257 NGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPNIFVFNSLMNVNAHDLNYTFQL 316

Query: 302 CKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYEEVRSIALTGALKLDVITYSTIIK 123
            K+M+ LGV  D+ASYN+LLK CC AGRVDLAQDIY EV+ +  TG LKLDV TYSTI+K
Sbjct: 317 YKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGVLKLDVFTYSTIVK 376

Query: 122 VLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISACANA 3
           V ADAK+W+MAL++KE M SAGV+PN+VTWSSLIS+CAN+
Sbjct: 377 VFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANS 416



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 45/239 (18%)
 Frame = -1

Query: 596  ASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKTDSPNMYVCRTMIDVCGLCGNF- 420
            A + P+  TW SS+I      G ++ A+  +E   S    PN   C T++  C     F 
Sbjct: 397  AGVSPNMVTW-SSLISSCANSGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFD 455

Query: 419  --------FKSRYIYESL-----------------LAQKVIPNT---------------- 363
                    +K + +++ +                 L    +PN                 
Sbjct: 456  RAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFK 515

Query: 362  ---YFFNSLMNVNAHDLSYTLNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYE 192
                 +N LM     D  +   + + MK +G+ P+  S+++L+ +C  +  V+ A  I  
Sbjct: 516  PTITTYNILMKACGTDYYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILT 575

Query: 191  EVRSIALTGALKLDVITYSTIIKVLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISA 15
             +R   +      DV+ Y+T IKV  + K W++A  + E M    + PN+VT+S+L+ A
Sbjct: 576  TMRMAGVDP----DVVAYTTAIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRA 630


>ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g02830, chloroplastic-like [Cucumis sativus]
          Length = 855

 Score =  291 bits (745), Expect = 8e-77
 Identities = 140/220 (63%), Positives = 173/220 (78%)
 Frame = -1

Query: 662 LKPSEIFDLCLGKRDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKT 483
           +KPSE+  LC+  R+P  A+RYAS+LPHA   F + I  FGKK DLKSA IAY  SK+  
Sbjct: 197 MKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINEFGKKRDLKSAYIAYTESKANM 256

Query: 482 DSPNMYVCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLNI 303
           +  NMY+ RT+IDVCGLCG++ KSR IY+ L+ Q V PN + FNSLMNVNAHDL+YT  +
Sbjct: 257 NGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPNIFVFNSLMNVNAHDLNYTFQL 316

Query: 302 CKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYEEVRSIALTGALKLDVITYSTIIK 123
            K+M+ LGV  D+ASYN+LLK CC AGRVDLAQDIY EV+ +  TG LKLDV TYSTI+K
Sbjct: 317 YKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGVLKLDVFTYSTIVK 376

Query: 122 VLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISACANA 3
           V ADAK+W+MAL++KE M SAGV+PN+VTWSSLIS+CAN+
Sbjct: 377 VFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANS 416



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 51/245 (20%)
 Frame = -1

Query: 596  ASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKTDSPNMYVCRTMIDVCGLCGNF- 420
            A + P+  TW SS+I      G ++ A+  +E   S    PN   C T++  C     F 
Sbjct: 397  AGVSPNMVTW-SSLISSCANSGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFD 455

Query: 419  --------FKSRYIYESL-----------------LAQKVIPNT---------------- 363
                    +K + +++ +                 L    +PN                 
Sbjct: 456  RAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFK 515

Query: 362  ---YFFNSLMNVNAHDLSYTLNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYE 192
                 +N LM     D  +   + + MK +G+ P+  S+++L+ +C  +  V+ A  I  
Sbjct: 516  PTITTYNILMKACGTDYYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILT 575

Query: 191  EVRSIALTGALKLDVITYSTIIKV------LADAKMWQMALKIKEHMLSAGVTPNIVTWS 30
             +R   +      DV+ Y+T IKV      L     W++A  + E M    + PN+VT+S
Sbjct: 576  TMRMAGVDP----DVVAYTTAIKVSIPLAVLVLKXNWKLAFSLFEEMKGFEIQPNLVTYS 631

Query: 29   SLISA 15
            +L+ A
Sbjct: 632  TLLRA 636


>ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Glycine max]
          Length = 811

 Score =  290 bits (742), Expect = 2e-76
 Identities = 142/220 (64%), Positives = 171/220 (77%)
 Frame = -1

Query: 662 LKPSEIFDLCLGKRDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKT 483
           ++PS+I   C+  R+P  AVRYA LLPHAH  F +II  FGK+ DL SAL AYE SK   
Sbjct: 163 VQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEASKKHL 222

Query: 482 DSPNMYVCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLNI 303
           ++PNMY+ R  ID CGLC ++ KSRYIYE LL QK+ PN Y FNSLMNVN+HDLSYTLN+
Sbjct: 223 NTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNSHDLSYTLNL 282

Query: 302 CKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYEEVRSIALTGALKLDVITYSTIIK 123
            ++M+ LG+ PD+ SYN+LLK CC AGRVDLAQDIY E++ +   G LKLDV TYSTIIK
Sbjct: 283 YQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIK 342

Query: 122 VLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISACANA 3
           V AD K+WQMALKIK+ MLSAGV+ NIV WSSLI+ACA+A
Sbjct: 343 VFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHA 382



 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 35/119 (29%), Positives = 65/119 (54%)
 Frame = -1

Query: 371 PNTYFFNSLMNVNAHDLSYTLNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYE 192
           P T  +N L+     D  +   + K M+ +G++P+  S+++L+ +C  +  V+ A +I +
Sbjct: 478 PTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEILK 537

Query: 191 EVRSIALTGALKLDVITYSTIIKVLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISA 15
            +        +K DVI Y+T IKV  ++K +  AL + E M    + PN VT+++L+ A
Sbjct: 538 TMGD----AGIKPDVIAYTTAIKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKA 592


>ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500581|gb|AES81784.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 829

 Score =  283 bits (725), Expect = 2e-74
 Identities = 139/220 (63%), Positives = 168/220 (76%)
 Frame = -1

Query: 662 LKPSEIFDLCLGKRDPDTAVRYASLLPHAHTWFSSIILGFGKKGDLKSALIAYETSKSKT 483
           ++PS+I   C+  R P  AVRYASLLP A   F SII  F K+ DL SAL AY+  K   
Sbjct: 151 VQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYDALKKNL 210

Query: 482 DSPNMYVCRTMIDVCGLCGNFFKSRYIYESLLAQKVIPNTYFFNSLMNVNAHDLSYTLNI 303
             PNMY+ R +ID CGLCG+F KSRYIYE LL QK+ PN Y FNSLMNVNAHDLSY+LN+
Sbjct: 211 KGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYSLNL 270

Query: 302 CKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYEEVRSIALTGALKLDVITYSTIIK 123
            ++M+KLG+ PD+ASYN+LLK CC AGRVD+AQD+Y +++ +   G LKLDV TYSTIIK
Sbjct: 271 YQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFTYSTIIK 330

Query: 122 VLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISACANA 3
           V ADAK+WQMALKIK  MLSAGV+ N + WSSLI+ACA+A
Sbjct: 331 VFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHA 370



 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 36/119 (30%), Positives = 68/119 (57%)
 Frame = -1

Query: 371 PNTYFFNSLMNVNAHDLSYTLNICKHMKKLGVAPDLASYNVLLKVCCHAGRVDLAQDIYE 192
           P T  +N L+     +  +   +   M+ +G++P+  S+++L+ +C  +  VD    + E
Sbjct: 466 PTTTTYNILLKACGTNYYHAKALINEMRTVGLSPNQISWSILINICGASENVD---GVIE 522

Query: 191 EVRSIALTGALKLDVITYSTIIKVLADAKMWQMALKIKEHMLSAGVTPNIVTWSSLISA 15
            +R++   G +K DVI+Y+T IKV  ++K +  AL +   M S G  PN+VT+++L+ A
Sbjct: 523 ILRTMVDAG-IKPDVISYTTAIKVCVESKNFTQALTLYREMKSYGTHPNLVTYNTLLRA 580