BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035333
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181553.1| pentatricopeptide repeat-containing protein [Ar...   131   5e-29
ref|XP_002879856.1| pentatricopeptide repeat-containing protein ...   130   1e-28
ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arab...   128   5e-28
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,...   126   2e-27
emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]   124   6e-27

>ref|NP_181553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75265350|sp|Q9S733.1|PP196_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g40240, mitochondrial; Flags: Precursor
           gi|4587998|gb|AAD25939.1|AF085279_12 hypothetical
           protein [Arabidopsis thaliana] gi|4586041|gb|AAD25659.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|28393486|gb|AAO42164.1| unknown protein [Arabidopsis
           thaliana] gi|28973567|gb|AAO64108.1| unknown protein
           [Arabidopsis thaliana] gi|110737021|dbj|BAF00465.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254707|gb|AEC09801.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  131 bits (330), Expect = 5e-29
 Identities = 65/107 (60%), Positives = 81/107 (75%)
 Frame = +2

Query: 8   EVLEKILEQGLKVDTRTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSL 187
           EV+ KI E G   D+R+YDALV+GACRAGKVE A+ +LR+MEE+GV VLY TH HVIT L
Sbjct: 198 EVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEEDGVTVLYSTHAHVITGL 257

Query: 188 LGMGCFKLSFEFVMAFAGRDKPLDKENFGFLLNCLIKRRRVEEAKLV 328
           +  G + L  EFVMA+AG+D  LD E+FGFL   L+KR+R EEA +V
Sbjct: 258 VEGGYYALGLEFVMAYAGKDLRLDSESFGFLAGKLVKRKRYEEAMIV 304


>ref|XP_002879856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325695|gb|EFH56115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 338

 Score =  130 bits (327), Expect = 1e-28
 Identities = 64/107 (59%), Positives = 81/107 (75%)
 Frame = +2

Query: 8   EVLEKILEQGLKVDTRTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSL 187
           EV+ KI E G+  D+R+YDALV+GACRAGKVE A+ +LR+MEE+ V VLY TH HVI  L
Sbjct: 198 EVMRKIEEDGISTDSRSYDALVLGACRAGKVEAAMAILRRMEEDCVTVLYSTHAHVIAGL 257

Query: 188 LGMGCFKLSFEFVMAFAGRDKPLDKENFGFLLNCLIKRRRVEEAKLV 328
           +  G + L  EFVMA+AG+D  LD E+FGFL   L+KR+R EEAK+V
Sbjct: 258 VEGGYYALGLEFVMAYAGKDLGLDGESFGFLAGKLVKRKRFEEAKIV 304


>ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
           lyrata] gi|297322185|gb|EFH52606.1| hypothetical protein
           ARALYDRAFT_486042 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  128 bits (321), Expect = 5e-28
 Identities = 65/108 (60%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
 Frame = +2

Query: 8   EVLEKILEQG-LKVDTRTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITS 184
           +VL K+ E+G +  DTRTYDALV+GAC++G VE A+++LR+MEEEG+ VLY TH +VI  
Sbjct: 201 KVLRKLEEEGVMSPDTRTYDALVLGACKSGNVEAAMVILRRMEEEGLSVLYATHAYVIGE 260

Query: 185 LLGMGCFKLSFEFVMAFAGRDKPLDKENFGFLLNCLIKRRRVEEAKLV 328
           LL  G + LS EFVMA+AG+DK LD+EN G L + LIKR+R +EAKLV
Sbjct: 261 LLESGYYALSVEFVMAYAGKDKRLDEENLGSLASKLIKRKRFKEAKLV 308


>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  126 bits (316), Expect = 2e-27
 Identities = 63/107 (58%), Positives = 80/107 (74%)
 Frame = +2

Query: 8   EVLEKILEQGLKVDTRTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSL 187
           +V+++I E+GL  D RTYDALV+GACR GKVE AL++LR+M ++GV VLY THVHVI +L
Sbjct: 486 KVMKRIEEEGLGADARTYDALVLGACRTGKVEAALVVLRRMVDDGVHVLYSTHVHVINAL 545

Query: 188 LGMGCFKLSFEFVMAFAGRDKPLDKENFGFLLNCLIKRRRVEEAKLV 328
           L +GC+  + +FVM F GRD   D E FG L + LIK  R EEAKLV
Sbjct: 546 LRLGCYVQATKFVMIFGGRDIAFDTEIFGILASKLIKLERFEEAKLV 592


>emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]
          Length = 330

 Score =  124 bits (312), Expect = 6e-27
 Identities = 61/108 (56%), Positives = 82/108 (75%)
 Frame = +2

Query: 5   VEVLEKILEQGLKVDTRTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITS 184
           V VL ++ E+G+  D RTYDALV+GAC+AGKVEGA+++LR+ME++GV +LY TH HVI  
Sbjct: 195 VGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVLRRMEDDGVPILYSTHAHVING 254

Query: 185 LLGMGCFKLSFEFVMAFAGRDKPLDKENFGFLLNCLIKRRRVEEAKLV 328
           LL +G +  + EFVM   G+DK LD+E+FG L + LI  +R EEAKLV
Sbjct: 255 LLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINLKRFEEAKLV 302