BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035303
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ...   168   5e-40
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2...   166   1e-39
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]   165   4e-39
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,...   162   2e-38
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36

>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240852|gb|ABD32710.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355501623|gb|AES82826.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 451

 Score =  168 bits (425), Expect = 5e-40
 Identities = 78/97 (80%), Positives = 83/97 (85%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           LLCRMKVKGCNPDIVHYNTVILGFCRE RA DA KVI+DM  NGC+PNLVSYRTLVNGLC
Sbjct: 274 LLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLC 333

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2
             GMLDEA  Y+EEM+ KGF PHF+  H LVKGFCNV
Sbjct: 334 HLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNV 370



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = -2

Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80
           PDI  Y  ++   CR+ +   A+ + EDM   G +P+  +Y TL+N LC +  L EA   
Sbjct: 215 PDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKL 274

Query: 79  LEEMILKGFVPHFSAFHGLVKGFC 8
           L  M +KG  P    ++ ++ GFC
Sbjct: 275 LCRMKVKGCNPDIVHYNTVILGFC 298


>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
           predicted protein [Populus trichocarpa]
          Length = 475

 Score =  166 bits (421), Expect = 1e-39
 Identities = 75/97 (77%), Positives = 85/97 (87%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           LLCRMKVKGCNPDI+HYNTVILGFCRE RA DA KV+EDM  NGC+PNLVSYRTLV GLC
Sbjct: 298 LLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLC 357

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2
            QGM DEAK++LEEM++KGF PHF+  + L+KGFCNV
Sbjct: 358 DQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNV 394



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/84 (34%), Positives = 47/84 (55%)
 Frame = -2

Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80
           PD+  Y  ++   CR+ +   A+ ++EDM   G +P+ +SY TL+N LC +  L EA   
Sbjct: 239 PDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKL 298

Query: 79  LEEMILKGFVPHFSAFHGLVKGFC 8
           L  M +KG  P    ++ ++ GFC
Sbjct: 299 LCRMKVKGCNPDIIHYNTVILGFC 322


>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  165 bits (417), Expect = 4e-39
 Identities = 75/97 (77%), Positives = 82/97 (84%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           LLCRMKVKGCNPDIVHYNTVILGFCRE R  DA KV+EDMP NGC PNL+SY TLV+GLC
Sbjct: 245 LLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLC 304

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2
            QG+ DEAK Y+EEM+ KGF PHFS FH L+ GFCNV
Sbjct: 305 DQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNV 341



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 48/84 (57%)
 Frame = -2

Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80
           PD+  Y  ++ G CR+ +   A+ ++EDM   G +P+ +SY TL+N LC +  L EA   
Sbjct: 186 PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKL 245

Query: 79  LEEMILKGFVPHFSAFHGLVKGFC 8
           L  M +KG  P    ++ ++ GFC
Sbjct: 246 LCRMKVKGCNPDIVHYNTVILGFC 269


>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 262

 Score =  162 bits (411), Expect = 2e-38
 Identities = 77/97 (79%), Positives = 82/97 (84%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           LLCRMKVKGCNPDIVHYNT+I GFCRE RA DA KV+ DM  NGC+PNLVSYRTLV G+C
Sbjct: 86  LLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGIC 145

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2
            QGM DEAK+YLEEMILKGF PHFS  H LVKGFC V
Sbjct: 146 DQGMFDEAKSYLEEMILKGFSPHFSVSHALVKGFCIV 182



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 47/84 (55%)
 Frame = -2

Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80
           PDI  Y  ++ G CR  +   A+ ++EDM   G +P+ ++Y TL+N LC +  L EA   
Sbjct: 27  PDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKL 86

Query: 79  LEEMILKGFVPHFSAFHGLVKGFC 8
           L  M +KG  P    ++ ++ GFC
Sbjct: 87  LCRMKVKGCNPDIVHYNTIISGFC 110


>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
           mitochondrial-like [Cucumis sativus]
           gi|449499186|ref|XP_004160743.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g01400,
           mitochondrial-like [Cucumis sativus]
          Length = 482

 Score =  155 bits (393), Expect = 2e-36
 Identities = 70/97 (72%), Positives = 79/97 (81%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           LLCRMKVKGCNPDI HYNTVI+GFCRE RA DA K++EDM  NGC+PNLVSY +L NGLC
Sbjct: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2
            QGM + AK Y+EEM LKGF PHFS  H LVKGF ++
Sbjct: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSI 400



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/95 (35%), Positives = 54/95 (56%)
 Frame = -2

Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113
           L  +M  +   PD+  Y T++ G CR+ +   A+ ++EDM   G IP+ +SY TL+N LC
Sbjct: 234 LFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLC 293

Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFC 8
            +  L EA   L  M +KG  P  + ++ ++ GFC
Sbjct: 294 RKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFC 328



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/87 (32%), Positives = 45/87 (51%)
 Frame = -2

Query: 268 GCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEA 89
           G  P+   YN +I  FC       A  +   M E   IP++ +YRTL+ GLC +  ++ A
Sbjct: 207 GVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGA 266

Query: 88  KAYLEEMILKGFVPHFSAFHGLVKGFC 8
              LE+M+ KG++P   ++  L+   C
Sbjct: 267 VDLLEDMLNKGYIPDTLSYATLLNSLC 293