BLASTX nr result
ID: Coptis24_contig00035303
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00035303 (293 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 168 5e-40 ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 166 1e-39 emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 165 4e-39 ref|XP_002515077.1| pentatricopeptide repeat-containing protein,... 162 2e-38 ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 155 2e-36 >ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 451 Score = 168 bits (425), Expect = 5e-40 Identities = 78/97 (80%), Positives = 83/97 (85%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 LLCRMKVKGCNPDIVHYNTVILGFCRE RA DA KVI+DM NGC+PNLVSYRTLVNGLC Sbjct: 274 LLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLC 333 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2 GMLDEA Y+EEM+ KGF PHF+ H LVKGFCNV Sbjct: 334 HLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNV 370 Score = 59.3 bits (142), Expect = 3e-07 Identities = 29/84 (34%), Positives = 45/84 (53%) Frame = -2 Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80 PDI Y ++ CR+ + A+ + EDM G +P+ +Y TL+N LC + L EA Sbjct: 215 PDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKL 274 Query: 79 LEEMILKGFVPHFSAFHGLVKGFC 8 L M +KG P ++ ++ GFC Sbjct: 275 LCRMKVKGCNPDIVHYNTVILGFC 298 >ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa] Length = 475 Score = 166 bits (421), Expect = 1e-39 Identities = 75/97 (77%), Positives = 85/97 (87%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 LLCRMKVKGCNPDI+HYNTVILGFCRE RA DA KV+EDM NGC+PNLVSYRTLV GLC Sbjct: 298 LLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLC 357 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2 QGM DEAK++LEEM++KGF PHF+ + L+KGFCNV Sbjct: 358 DQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNV 394 Score = 62.0 bits (149), Expect = 5e-08 Identities = 29/84 (34%), Positives = 47/84 (55%) Frame = -2 Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80 PD+ Y ++ CR+ + A+ ++EDM G +P+ +SY TL+N LC + L EA Sbjct: 239 PDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKL 298 Query: 79 LEEMILKGFVPHFSAFHGLVKGFC 8 L M +KG P ++ ++ GFC Sbjct: 299 LCRMKVKGCNPDIIHYNTVILGFC 322 >emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] Length = 422 Score = 165 bits (417), Expect = 4e-39 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 LLCRMKVKGCNPDIVHYNTVILGFCRE R DA KV+EDMP NGC PNL+SY TLV+GLC Sbjct: 245 LLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLC 304 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2 QG+ DEAK Y+EEM+ KGF PHFS FH L+ GFCNV Sbjct: 305 DQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNV 341 Score = 64.3 bits (155), Expect = 1e-08 Identities = 30/84 (35%), Positives = 48/84 (57%) Frame = -2 Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80 PD+ Y ++ G CR+ + A+ ++EDM G +P+ +SY TL+N LC + L EA Sbjct: 186 PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKL 245 Query: 79 LEEMILKGFVPHFSAFHGLVKGFC 8 L M +KG P ++ ++ GFC Sbjct: 246 LCRMKVKGCNPDIVHYNTVILGFC 269 >ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 262 Score = 162 bits (411), Expect = 2e-38 Identities = 77/97 (79%), Positives = 82/97 (84%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 LLCRMKVKGCNPDIVHYNT+I GFCRE RA DA KV+ DM NGC+PNLVSYRTLV G+C Sbjct: 86 LLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGIC 145 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2 QGM DEAK+YLEEMILKGF PHFS H LVKGFC V Sbjct: 146 DQGMFDEAKSYLEEMILKGFSPHFSVSHALVKGFCIV 182 Score = 63.9 bits (154), Expect = 1e-08 Identities = 30/84 (35%), Positives = 47/84 (55%) Frame = -2 Query: 259 PDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAY 80 PDI Y ++ G CR + A+ ++EDM G +P+ ++Y TL+N LC + L EA Sbjct: 27 PDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKL 86 Query: 79 LEEMILKGFVPHFSAFHGLVKGFC 8 L M +KG P ++ ++ GFC Sbjct: 87 LCRMKVKGCNPDIVHYNTIISGFC 110 >ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis sativus] gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis sativus] Length = 482 Score = 155 bits (393), Expect = 2e-36 Identities = 70/97 (72%), Positives = 79/97 (81%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 LLCRMKVKGCNPDI HYNTVI+GFCRE RA DA K++EDM NGC+PNLVSY +L NGLC Sbjct: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNV 2 QGM + AK Y+EEM LKGF PHFS H LVKGF ++ Sbjct: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSI 400 Score = 68.9 bits (167), Expect = 4e-10 Identities = 34/95 (35%), Positives = 54/95 (56%) Frame = -2 Query: 292 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 113 L +M + PD+ Y T++ G CR+ + A+ ++EDM G IP+ +SY TL+N LC Sbjct: 234 LFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLC 293 Query: 112 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFC 8 + L EA L M +KG P + ++ ++ GFC Sbjct: 294 RKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFC 328 Score = 56.2 bits (134), Expect = 3e-06 Identities = 28/87 (32%), Positives = 45/87 (51%) Frame = -2 Query: 268 GCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEA 89 G P+ YN +I FC A + M E IP++ +YRTL+ GLC + ++ A Sbjct: 207 GVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGA 266 Query: 88 KAYLEEMILKGFVPHFSAFHGLVKGFC 8 LE+M+ KG++P ++ L+ C Sbjct: 267 VDLLEDMLNKGYIPDTLSYATLLNSLC 293