BLASTX nr result

ID: Coptis24_contig00035292 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035292
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284508.2| PREDICTED: uncharacterized protein LOC100248...    80   2e-13
emb|CBI18998.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_002300975.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10

>ref|XP_002284508.2| PREDICTED: uncharacterized protein LOC100248995 [Vitis vinifera]
          Length = 1119

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 49/97 (50%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
 Frame = -3

Query: 279  RLAEAKQHEEALENELANMWVLVANMRK--TXXXXXXXXXXXXXXSIIHTVGNSLPSSNH 106
            RL EAKQ EE LENELANMW+LVA MRK  T               +   V N  P  N 
Sbjct: 1010 RLDEAKQREEDLENELANMWMLVAKMRKSGTTSEETSSEGVHESNILQSRVRNGFPPING 1069

Query: 105  LSSKFFDEVV--IDKFSSLEEARMCYEKEKRRCKELE 1
             S+K FDE+   +D+ S+ EE R  Y KEKRRCKELE
Sbjct: 1070 HSNKIFDEICENMDEISTSEELRTSYLKEKRRCKELE 1106


>emb|CBI18998.3| unnamed protein product [Vitis vinifera]
          Length = 1144

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 49/97 (50%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
 Frame = -3

Query: 279  RLAEAKQHEEALENELANMWVLVANMRK--TXXXXXXXXXXXXXXSIIHTVGNSLPSSNH 106
            RL EAKQ EE LENELANMW+LVA MRK  T               +   V N  P  N 
Sbjct: 1005 RLDEAKQREEDLENELANMWMLVAKMRKSGTTSEETSSEGVHESNILQSRVRNGFPPING 1064

Query: 105  LSSKFFDEVV--IDKFSSLEEARMCYEKEKRRCKELE 1
             S+K FDE+   +D+ S+ EE R  Y KEKRRCKELE
Sbjct: 1065 HSNKIFDEICENMDEISTSEELRTSYLKEKRRCKELE 1101


>ref|XP_002300975.1| predicted protein [Populus trichocarpa] gi|222842701|gb|EEE80248.1|
           predicted protein [Populus trichocarpa]
          Length = 450

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 45/99 (45%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
 Frame = -3

Query: 282 ERLAEAKQHEEALENELANMWVLVANMRKTXXXXXXXXXXXXXXSIIHTVG---NSLPSS 112
           ++L EAK HEE LENELANMWVLVA MRK+              S    VG     L S+
Sbjct: 310 KQLDEAKHHEEDLENELANMWVLVAKMRKSGVNAEDMPSEGVYASTTFGVGLKSGCLLSN 369

Query: 111 NHLSSKFFDEVV--IDKFSSLEEARMCYEKEKRRCKELE 1
            H S    DE    ID   +LEE ++ Y+KE+R+CK+LE
Sbjct: 370 GHSSRISKDETFENIDGMKTLEELKVSYQKERRKCKQLE 408


Top