BLASTX nr result
ID: Coptis24_contig00035281
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00035281
(327 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19528.1|AF215731_1 Ran GTPase activating protein [Medicago... 58 4e-09
ref|XP_002300846.1| predicted protein [Populus trichocarpa] gi|2... 56 9e-09
ref|XP_002307582.1| predicted protein [Populus trichocarpa] gi|2... 52 2e-07
gb|AAD27557.1|AF111710_3 hypothetical protein [Oryza sativa Indi... 51 4e-07
gb|EAY98887.1| hypothetical protein OsI_20842 [Oryza sativa Indi... 51 4e-07
>gb|AAF19528.1|AF215731_1 Ran GTPase activating protein [Medicago sativa subsp. x varia]
Length = 533
Score = 58.2 bits (139), Expect(2) = 4e-09
Identities = 37/79 (46%), Positives = 42/79 (53%), Gaps = 28/79 (35%)
Frame = +2
Query: 32 VRAFGDLLKTQNSLRKLYLMNDGISEEAAR----------------------------GI 127
VRAF LLK+QN L +LYLMNDGISEEAA+ I
Sbjct: 231 VRAFRALLKSQNDLEELYLMNDGISEEAAKAVAELIPSTEKLKVLHFHNNMTGDEGAFAI 290
Query: 128 SVVVNRSPALEDFCCSTMR 184
+ VV RSPALEDF CS+ R
Sbjct: 291 AEVVKRSPALEDFRCSSTR 309
Score = 27.3 bits (59), Expect(2) = 4e-09
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 VGSEG-VTFIEALKHVLVCRSFVRGAICFGVEAGVAHSRPLSSTADL 324
VGSEG V EAL + FGVEAGVA S+ + ADL
Sbjct: 310 VGSEGGVALAEALGACTHLKKLDLRDNMFGVEAGVALSKVIPVFADL 356
>ref|XP_002300846.1| predicted protein [Populus trichocarpa] gi|222842572|gb|EEE80119.1|
predicted protein [Populus trichocarpa]
Length = 543
Score = 55.8 bits (133), Expect(2) = 9e-09
Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 28/79 (35%)
Frame = +2
Query: 32 VRAFGDLLKTQNSLRKLYLMNDGISEEAAR----------------------------GI 127
VRAF LLKTQN+L +LYL+NDGISEEAAR I
Sbjct: 232 VRAFEKLLKTQNNLEELYLINDGISEEAARAVCELIPSTEKLKVLHFHNNMTGDEGAVAI 291
Query: 128 SVVVNRSPALEDFCCSTMR 184
+ +V RS ALEDF CS+ R
Sbjct: 292 AEMVKRSTALEDFRCSSTR 310
Score = 28.5 bits (62), Expect(2) = 9e-09
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 VGSEG-VTFIEALKHVLVCRSFVRGAICFGVEAGVAHSRPLSSTADL 324
VG EG V EAL R FGVEAG+A SR L + ADL
Sbjct: 311 VGLEGGVALAEALGSCNHLRKLDLRDNMFGVEAGIALSRSLFAFADL 357
>ref|XP_002307582.1| predicted protein [Populus trichocarpa] gi|222857031|gb|EEE94578.1|
predicted protein [Populus trichocarpa]
Length = 522
Score = 52.4 bits (124), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 32 VRAFGDLLKTQNSLRKLYLMNDGISEEAARGISVVVNRSPALE 160
VRAFG LLKTQN L +LYL+NDGISEEAAR + ++ + L+
Sbjct: 231 VRAFGMLLKTQNILEELYLINDGISEEAARAVCELIPSTEKLK 273
Score = 27.7 bits (60), Expect(2) = 2e-07
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 VGSEG-VTFIEALKHVLVCRSFVRGAICFGVEAGVAHSRPLSSTADL 324
VG EG V EAL R FGVEAG+A S+ L + ADL
Sbjct: 310 VGLEGGVALAEALGSCSHLRKLDLRDNMFGVEAGIALSKSLFAFADL 356
>gb|AAD27557.1|AF111710_3 hypothetical protein [Oryza sativa Indica Group]
Length = 789
Score = 50.8 bits (120), Expect(2) = 4e-07
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 28/79 (35%)
Frame = +2
Query: 32 VRAFGDLLKTQNSLRKLYLMNDGISEEAARGIS--------------------------- 130
VRAF +LLK+Q++L +LY+MNDGISEEAA+ +S
Sbjct: 232 VRAFEELLKSQDNLEELYVMNDGISEEAAQALSELIPSTEKLKILHFHNNMTGDEGAMFI 291
Query: 131 -VVVNRSPALEDFCCSTMR 184
+V RSP LE F CS R
Sbjct: 292 AEMVKRSPNLESFRCSATR 310
Score = 28.1 bits (61), Expect(2) = 4e-07
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 187 VGSEG-VTFIEALKHVLVCRSFVRGAICFGVEAGVAHSRPLSSTADLI 327
+GS+G V EAL + FGVEAG+A S+ LS DL+
Sbjct: 311 IGSDGGVALAEALGTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLV 358
>gb|EAY98887.1| hypothetical protein OsI_20842 [Oryza sativa Indica Group]
Length = 544
Score = 50.8 bits (120), Expect(2) = 4e-07
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 28/79 (35%)
Frame = +2
Query: 32 VRAFGDLLKTQNSLRKLYLMNDGISEEAARGIS--------------------------- 130
VRAF +LLK+Q++L +LY+MNDGISEEAA+ +S
Sbjct: 232 VRAFEELLKSQDNLEELYVMNDGISEEAAQALSELIPSTEKLKILHFHNNMTGDEGAMFI 291
Query: 131 -VVVNRSPALEDFCCSTMR 184
+V RSP LE F CS R
Sbjct: 292 AEMVKRSPNLESFRCSATR 310
Score = 28.1 bits (61), Expect(2) = 4e-07
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 187 VGSEG-VTFIEALKHVLVCRSFVRGAICFGVEAGVAHSRPLSSTADLI 327
+GS+G V EAL + FGVEAG+A S+ LS DL+
Sbjct: 311 IGSDGGVALAEALGTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLV 358