BLASTX nr result

ID: Coptis24_contig00035278 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035278
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004142512.1| PREDICTED: bark storage protein A-like [Cucu...    69   5e-10
ref|XP_002280745.1| PREDICTED: bark storage protein A-like [Viti...    68   7e-10
ref|XP_002514270.1| conserved hypothetical protein [Ricinus comm...    67   2e-09
emb|CBI28039.3| unnamed protein product [Vitis vinifera]               66   3e-09
gb|EEC78746.1| hypothetical protein OsI_18961 [Oryza sativa Indi...    65   8e-09

>ref|XP_004142512.1| PREDICTED: bark storage protein A-like [Cucumis sativus]
           gi|449528543|ref|XP_004171263.1| PREDICTED: bark storage
           protein A-like [Cucumis sativus]
          Length = 347

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/80 (38%), Positives = 53/80 (66%)
 Frame = +3

Query: 78  VLVLSYLVFISMSIGASQAELSKDVMKMIRKVNKDGPYIGVLVPSSTELQPIFKSSSYQP 257
           +++LS +V +      + A + K +MK I +VNK+GPY+G++VP++ E+ P+ +S S   
Sbjct: 7   LVILSVVVMVLEISLMTHAAVPKSIMKHIDRVNKNGPYLGIVVPNAFEMNPLLQSPSLMA 66

Query: 258 GDSYLHIDCAGRRFHFGRIE 317
             +  H+D +GRRF FGRI+
Sbjct: 67  DHNLPHLDFSGRRFRFGRIK 86


>ref|XP_002280745.1| PREDICTED: bark storage protein A-like [Vitis vinifera]
          Length = 338

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 29/77 (37%), Positives = 51/77 (66%)
 Frame = +3

Query: 87  LSYLVFISMSIGASQAELSKDVMKMIRKVNKDGPYIGVLVPSSTELQPIFKSSSYQPGDS 266
           + +LV + +    ++  +S   MK I +VNK+GPY+G++VP+S E+ P+ +S S+   D 
Sbjct: 1   MGFLVMVVVMGVGTEGAVSVSSMKKITRVNKEGPYLGIVVPNSYEMDPLLQSPSFVADDK 60

Query: 267 YLHIDCAGRRFHFGRIE 317
           + ++D AGRRF  G++E
Sbjct: 61  FPYLDFAGRRFRIGKLE 77


>ref|XP_002514270.1| conserved hypothetical protein [Ricinus communis]
           gi|223546726|gb|EEF48224.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 291

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 54/85 (63%)
 Frame = +3

Query: 63  MCSLGVLVLSYLVFISMSIGASQAELSKDVMKMIRKVNKDGPYIGVLVPSSTELQPIFKS 242
           M  LG LVL       + IG + AE+S+D M+ I ++N++GPY G++VP++ E+ P+ +S
Sbjct: 1   MIRLGFLVLF------VGIGTAYAEVSRDAMRKIERLNEEGPYFGIVVPNAFEMNPLLQS 54

Query: 243 SSYQPGDSYLHIDCAGRRFHFGRIE 317
            ++       ++D +GRRF  G++E
Sbjct: 55  QNFVAHAQVPYLDFSGRRFRIGKVE 79


>emb|CBI28039.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/69 (43%), Positives = 47/69 (68%)
 Frame = +3

Query: 111 MSIGASQAELSKDVMKMIRKVNKDGPYIGVLVPSSTELQPIFKSSSYQPGDSYLHIDCAG 290
           M +G   A +S   MK I +VNK+GPY+G++VP+S E+ P+ +S S+   D + ++D AG
Sbjct: 1   MGVGTEGA-VSVSSMKKITRVNKEGPYLGIVVPNSYEMDPLLQSPSFVADDKFPYLDFAG 59

Query: 291 RRFHFGRIE 317
           RRF  G++E
Sbjct: 60  RRFRIGKLE 68


>gb|EEC78746.1| hypothetical protein OsI_18961 [Oryza sativa Indica Group]
          Length = 258

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 26/67 (38%), Positives = 45/67 (67%)
 Frame = +3

Query: 114 SIGASQAELSKDVMKMIRKVNKDGPYIGVLVPSSTELQPIFKSSSYQPGDSYLHIDCAGR 293
           ++ A  A ++ D  + +R+VN+ GPY+GV+VP+  E++P+ +S ++ P     ++D AGR
Sbjct: 28  AVAAEAAAVAADAARGVRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGR 87

Query: 294 RFHFGRI 314
           RF FG I
Sbjct: 88  RFRFGSI 94


Top