BLASTX nr result
ID: Coptis24_contig00035271
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00035271 (244 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24 emb|CBI20513.3| unnamed protein product [Vitis vinifera] 117 1e-24 ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|2... 115 4e-24 ref|XP_004170791.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22 ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22 >ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Vitis vinifera] Length = 848 Score = 117 bits (292), Expect = 1e-24 Identities = 56/80 (70%), Positives = 68/80 (85%) Frame = +2 Query: 5 VPATKHIYMALINAYVKCGQFEKAKQVVLDKGLPAKNMNEVKSVCVSALASCGQMSDALE 184 V TKH++MALINAY CGQFEKAKQVVLDKG+P K++NE+KSV VSALA GQ+SDA + Sbjct: 566 VQVTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFD 625 Query: 185 LYEEIKQAGCHLEPKAVISL 244 +YEEIK +G +LEPKA+I L Sbjct: 626 IYEEIKNSGFNLEPKAIILL 645 >emb|CBI20513.3| unnamed protein product [Vitis vinifera] Length = 618 Score = 117 bits (292), Expect = 1e-24 Identities = 56/80 (70%), Positives = 68/80 (85%) Frame = +2 Query: 5 VPATKHIYMALINAYVKCGQFEKAKQVVLDKGLPAKNMNEVKSVCVSALASCGQMSDALE 184 V TKH++MALINAY CGQFEKAKQVVLDKG+P K++NE+KSV VSALA GQ+SDA + Sbjct: 336 VQVTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFD 395 Query: 185 LYEEIKQAGCHLEPKAVISL 244 +YEEIK +G +LEPKA+I L Sbjct: 396 IYEEIKNSGFNLEPKAIILL 415 >ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|222858182|gb|EEE95729.1| predicted protein [Populus trichocarpa] Length = 784 Score = 115 bits (288), Expect = 4e-24 Identities = 57/80 (71%), Positives = 68/80 (85%) Frame = +2 Query: 5 VPATKHIYMALINAYVKCGQFEKAKQVVLDKGLPAKNMNEVKSVCVSALASCGQMSDALE 184 + +K I+MALINAY CGQFEKAKQV+LDK P K++NE++SV VSALAS GQM+DAL Sbjct: 501 IQVSKQIFMALINAYATCGQFEKAKQVLLDKEFPIKHLNEIRSVLVSALASHGQMTDALN 560 Query: 185 LYEEIKQAGCHLEPKAVISL 244 LYEE+KQAG +LEPKAVISL Sbjct: 561 LYEEMKQAGSNLEPKAVISL 580 >ref|XP_004170791.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Cucumis sativus] Length = 379 Score = 110 bits (275), Expect = 1e-22 Identities = 54/80 (67%), Positives = 67/80 (83%) Frame = +2 Query: 5 VPATKHIYMALINAYVKCGQFEKAKQVVLDKGLPAKNMNEVKSVCVSALASCGQMSDALE 184 V ATKH++MALINAY GQFEKAKQV+ D+G+P KN+NEV+ V VSALAS GQ +DAL+ Sbjct: 101 VQATKHVFMALINAYAAHGQFEKAKQVISDEGIPVKNLNEVRCVLVSALASNGQTADALK 160 Query: 185 LYEEIKQAGCHLEPKAVISL 244 +Y+E+KQAGC L+ KAV SL Sbjct: 161 IYDEMKQAGCDLDCKAVSSL 180 >ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Cucumis sativus] Length = 1295 Score = 110 bits (275), Expect = 1e-22 Identities = 54/80 (67%), Positives = 67/80 (83%) Frame = +2 Query: 5 VPATKHIYMALINAYVKCGQFEKAKQVVLDKGLPAKNMNEVKSVCVSALASCGQMSDALE 184 V ATKH++MALINAY GQFEKAKQV+ D+G+P KN+NEV+ V VSALAS GQ +DAL+ Sbjct: 1017 VQATKHVFMALINAYAAHGQFEKAKQVISDEGIPVKNLNEVRCVLVSALASNGQTADALK 1076 Query: 185 LYEEIKQAGCHLEPKAVISL 244 +Y+E+KQAGC L+ KAV SL Sbjct: 1077 IYDEMKQAGCDLDCKAVSSL 1096