BLASTX nr result
ID: Coptis24_contig00035251
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00035251
(268 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi... 99 4e-19
emb|CBI32762.3| unnamed protein product [Vitis vinifera] 99 4e-19
ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago t... 95 5e-18
ref|XP_002331139.1| predicted protein [Populus trichocarpa] gi|2... 95 7e-18
dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare] 94 9e-18
>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 99.0 bits (245), Expect = 4e-19
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
VF++ME+KG P+ +TYN+LID YS KDE+E + L PDVYT TSLIHG C
Sbjct: 492 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 551
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
I +VD ALKLF EM ++GLV NVVTYTA
Sbjct: 552 IDGKVDMALKLFDEMPQRGLVPNVVTYTA 580
Score = 63.9 bits (154), Expect = 1e-08
Identities = 36/85 (42%), Positives = 46/85 (54%)
Frame = -2
Query: 255 MEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNCIVCE 76
MEK+GV + VTY +LI +S +EM K + DVY YTS+I NC
Sbjct: 286 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN 345
Query: 75 VDAALKLFSEMQEKGLVKNVVTYTA 1
V AL LF EM +KGL+ + TY A
Sbjct: 346 VKRALVLFDEMTDKGLIPSAHTYGA 370
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
+ ++ KGV+ + VTYN I+ Y ME + + +V TYT LIHG
Sbjct: 247 LMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFS 306
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
+ +++ A +LF EM+EKG+ +V YT+
Sbjct: 307 NIGKIEEAQRLFEEMREKGIEADVYVYTS 335
>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 99.0 bits (245), Expect = 4e-19
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
VF++ME+KG P+ +TYN+LID YS KDE+E + L PDVYT TSLIHG C
Sbjct: 496 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 555
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
I +VD ALKLF EM ++GLV NVVTYTA
Sbjct: 556 IDGKVDMALKLFDEMPQRGLVPNVVTYTA 584
Score = 63.9 bits (154), Expect = 1e-08
Identities = 36/85 (42%), Positives = 46/85 (54%)
Frame = -2
Query: 255 MEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNCIVCE 76
MEK+GV + VTY +LI +S +EM K + DVY YTS+I NC
Sbjct: 290 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN 349
Query: 75 VDAALKLFSEMQEKGLVKNVVTYTA 1
V AL LF EM +KGL+ + TY A
Sbjct: 350 VKRALVLFDEMTDKGLIPSAHTYGA 374
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
+ ++ KGV+ + VTYN I+ Y ME + + +V TYT LIHG
Sbjct: 251 LMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFS 310
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
+ +++ A +LF EM+EKG+ +V YT+
Sbjct: 311 NIGKIEEAQRLFEEMREKGIEADVYVYTS 339
>ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 772
Score = 95.1 bits (235), Expect = 5e-18
Identities = 49/89 (55%), Positives = 60/89 (67%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
+F+DMEKKG P+ +TYN LID Y K EM K L PD+YTY+SLIHG C
Sbjct: 484 LFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGEC 543
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
IV VD ALKLF+EM+ KG+ +NV TYT+
Sbjct: 544 IVGRVDEALKLFNEMRLKGITRNVATYTS 572
>ref|XP_002331139.1| predicted protein [Populus trichocarpa] gi|222872867|gb|EEF09998.1|
predicted protein [Populus trichocarpa]
Length = 329
Score = 94.7 bits (234), Expect = 7e-18
Identities = 45/89 (50%), Positives = 63/89 (70%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
+FQ+M+K G P+ VTYN+LID +S +DEM K + PD+YTYTSL+HG C
Sbjct: 198 LFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGEC 257
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
I ++D A++LF+E+++KGL NVVTYTA
Sbjct: 258 IFGKLDDAVELFNEVRQKGLPLNVVTYTA 286
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = -2
Query: 222 TYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNCIVCEVDAALKLFSEM 43
TY +LID++ +EM K ++ D++ YT +I+ NC + A LF E+
Sbjct: 3 TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62
Query: 42 QEKGLVKNVVTYTA 1
EKGLV NV TY A
Sbjct: 63 TEKGLVANVHTYGA 76
>dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 94.4 bits (233), Expect = 9e-18
Identities = 47/89 (52%), Positives = 60/89 (67%)
Frame = -2
Query: 267 VFQDMEKKGVRPSTVTYNILIDYYSXXXXXXXXXXXKDEMEVKRLRPDVYTYTSLIHGNC 88
+F+DME KG RPS VTYN++ID Y K EME K L PDVYTY +L+HG+C
Sbjct: 400 LFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHC 459
Query: 87 IVCEVDAALKLFSEMQEKGLVKNVVTYTA 1
+ +VD AL+LF EM+++G NVV YTA
Sbjct: 460 VNGKVDVALRLFEEMKQRGAKPNVVAYTA 488