BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035095
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     55   6e-06
emb|CAN71007.1| hypothetical protein VITISV_010109 [Vitis vinifera]    54   1e-05
gb|ABG37668.1| gag protein [Populus trichocarpa]                       54   1e-05
gb|ABG37657.1| integrase [Populus trichocarpa]                         54   1e-05

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +1

Query: 100 QVEP-YAKYRAKPPFPHKLAMVTRDTNYEEIRNVFKNLTINLPFLEAIKKLPHHAKFLKE 276
           ++EP   +YR   PFP +L         E+I   FK + IN+P L+AI+++P +AKFLK+
Sbjct: 448 EIEPDLDRYRPVAPFPDRLKPRKNSPQVEKILETFKQVKINIPLLDAIEQIPSYAKFLKD 507

Query: 277 LC 282
           LC
Sbjct: 508 LC 509


>emb|CAN71007.1| hypothetical protein VITISV_010109 [Vitis vinifera]
          Length = 1364

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/59 (44%), Positives = 34/59 (57%)
 Frame = +1

Query: 106 EPYAKYRAKPPFPHKLAMVTRDTNYEEIRNVFKNLTINLPFLEAIKKLPHHAKFLKELC 282
           E   K R  PPFP  L    R  N  EI  V   + +N+P L+ IK++P +AKFLK+LC
Sbjct: 385 EELMKKRTSPPFPQALYGKKRIKNASEILEVLSQVKVNIPLLDMIKQVPSYAKFLKDLC 443


>gb|ABG37668.1| gag protein [Populus trichocarpa]
          Length = 1886

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 136 PFPHKLAMVTRDTNYEEIRNVFKNLTINLPFLEAIKKLPHHAKFLKELC 282
           PFPH ++   +  +  EI   FK + IN+P L+AIK++P +AKFLK+LC
Sbjct: 248 PFPHAMSKQRKVNHNSEILETFKQVRINIPLLDAIKQVPSYAKFLKDLC 296


>gb|ABG37657.1| integrase [Populus trichocarpa]
          Length = 1738

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 136 PFPHKLAMVTRDTNYEEIRNVFKNLTINLPFLEAIKKLPHHAKFLKELC 282
           PFPH ++   +  +  EI   FK + IN+P L+AIK++P +AKFLK+LC
Sbjct: 100 PFPHAMSKQRKVNHNSEILETFKQVRINIPLLDAIKQVPSYAKFLKDLC 148