BLASTX nr result
ID: Coptis24_contig00035053
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00035053
(518 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containi... 160 8e-38
emb|CBI32673.3| unnamed protein product [Vitis vinifera] 160 8e-38
emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera] 160 1e-37
ref|XP_002308477.1| predicted protein [Populus trichocarpa] gi|2... 150 1e-34
ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containi... 145 4e-33
>ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 160 bits (406), Expect = 8e-38
Identities = 83/164 (50%), Positives = 111/164 (67%)
Frame = +2
Query: 26 TQKSHALDLKLGXXXXXXXXXXXXYIDSNSFSNARILFEETSNWDLVSATTIIGQFARNH 205
+Q+ H +KLG Y S + +A LF+E NWD+VSAT IG FAR H
Sbjct: 32 SQRIHGRAIKLGTTILEPDIVCS-YSASKALWDACKLFDEVPNWDVVSATATIGCFARYH 90
Query: 206 HHQYAISMFSRLLYFNVRPNEYTFATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVAS 385
HH+ AI FSR+L N++PN+++F TV+ SST L+ L+ G+Q HA A KMGL SNVFV S
Sbjct: 91 HHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGS 150
Query: 386 SLLHLYVKLGMIEEARRAFQDTYDPNVVSCTTMICGYLKNERFE 517
+++ Y KL I EA++AF+DT++PNVVS TT+I GYLK ERF+
Sbjct: 151 AVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFD 194
Score = 77.0 bits (188), Expect = 1e-12
Identities = 41/138 (29%), Positives = 71/138 (51%)
Frame = +2
Query: 98 YIDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTF 277
Y+ F +A LF + ++VS +I +++ +++ A+++F +L PNE TF
Sbjct: 187 YLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTF 246
Query: 278 ATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYD 457
+ + + AL +G+ FH A K +VF+ +SL+ Y K G +EE+ F
Sbjct: 247 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 306
Query: 458 PNVVSCTTMICGYLKNER 511
N+VS +ICGY + R
Sbjct: 307 KNIVSWNALICGYANHGR 324
>emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 160 bits (406), Expect = 8e-38
Identities = 83/164 (50%), Positives = 111/164 (67%)
Frame = +2
Query: 26 TQKSHALDLKLGXXXXXXXXXXXXYIDSNSFSNARILFEETSNWDLVSATTIIGQFARNH 205
+Q+ H +KLG Y S + +A LF+E NWD+VSAT IG FAR H
Sbjct: 313 SQRIHGRAIKLGTTILEPDIVCS-YSASKALWDACKLFDEVPNWDVVSATATIGCFARYH 371
Query: 206 HHQYAISMFSRLLYFNVRPNEYTFATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVAS 385
HH+ AI FSR+L N++PN+++F TV+ SST L+ L+ G+Q HA A KMGL SNVFV S
Sbjct: 372 HHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGS 431
Query: 386 SLLHLYVKLGMIEEARRAFQDTYDPNVVSCTTMICGYLKNERFE 517
+++ Y KL I EA++AF+DT++PNVVS TT+I GYLK ERF+
Sbjct: 432 AVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFD 475
Score = 77.0 bits (188), Expect = 1e-12
Identities = 41/138 (29%), Positives = 71/138 (51%)
Frame = +2
Query: 98 YIDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTF 277
Y+ F +A LF + ++VS +I +++ +++ A+++F +L PNE TF
Sbjct: 468 YLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTF 527
Query: 278 ATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYD 457
+ + + AL +G+ FH A K +VF+ +SL+ Y K G +EE+ F
Sbjct: 528 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 587
Query: 458 PNVVSCTTMICGYLKNER 511
N+VS +ICGY + R
Sbjct: 588 KNIVSWNALICGYANHGR 605
>emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 160 bits (404), Expect = 1e-37
Identities = 82/164 (50%), Positives = 111/164 (67%)
Frame = +2
Query: 26 TQKSHALDLKLGXXXXXXXXXXXXYIDSNSFSNARILFEETSNWDLVSATTIIGQFARNH 205
+Q++H +KLG Y S +A LF+E NWD+VSAT IG FAR H
Sbjct: 289 SQRAHGRAVKLGTTILEPDIVCS-YSASKELWDACKLFDEVPNWDVVSATATIGCFARYH 347
Query: 206 HHQYAISMFSRLLYFNVRPNEYTFATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVAS 385
HH+ AI FSR+L N++PN+++F TV+ S+T L+ L+ G+Q HA A KMGL SNVFV S
Sbjct: 348 HHEEAIYFFSRMLALNIKPNQFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFVGS 407
Query: 386 SLLHLYVKLGMIEEARRAFQDTYDPNVVSCTTMICGYLKNERFE 517
+++ Y KL I EA++AF+DT++PNVVS TT+I GYLK ERF+
Sbjct: 408 AVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFD 451
Score = 75.9 bits (185), Expect = 3e-12
Identities = 41/138 (29%), Positives = 70/138 (50%)
Frame = +2
Query: 98 YIDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTF 277
Y+ F +A LF ++VS +I +++ +++ A+++F +L PNE TF
Sbjct: 444 YLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGXLPNERTF 503
Query: 278 ATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYD 457
+ + + AL +G+ FH A K +VF+ +SL+ Y K G +EE+ F
Sbjct: 504 PCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPK 563
Query: 458 PNVVSCTTMICGYLKNER 511
N+VS +ICGY + R
Sbjct: 564 KNIVSWNALICGYANHGR 581
>ref|XP_002308477.1| predicted protein [Populus trichocarpa] gi|222854453|gb|EEE92000.1|
predicted protein [Populus trichocarpa]
Length = 504
Score = 150 bits (378), Expect = 1e-34
Identities = 76/132 (57%), Positives = 98/132 (74%)
Frame = +2
Query: 122 NARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTFATVLHSST 301
NA +F+ + D+VSATTIIGQFAR H ++ AI +FSR+L+ NV PNE+TF TV+HSST
Sbjct: 45 NALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFGTVIHSST 104
Query: 302 CLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYDPNVVSCTT 481
L L++G+QF A A KMGL+ VFV S++L Y KLG I+EA+RAF+D PN+VS T
Sbjct: 105 SLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTA 164
Query: 482 MICGYLKNERFE 517
+I GYLK RFE
Sbjct: 165 LIHGYLKKGRFE 176
Score = 81.6 bits (200), Expect = 6e-14
Identities = 42/140 (30%), Positives = 78/140 (55%)
Frame = +2
Query: 98 YIDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTF 277
Y+ F A LF++ ++V+ +IG F++ ++ A+++F ++ + P +YTF
Sbjct: 169 YLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTF 228
Query: 278 ATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYD 457
+ ++ + AL +G+ FHA A K +VFV +SL+ Y K G +E++ R F + +
Sbjct: 229 PCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELPE 288
Query: 458 PNVVSCTTMICGYLKNERFE 517
+VS +ICG+ +N R E
Sbjct: 289 RTIVSWNAVICGFAQNGRGE 308
>ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Glycine max]
Length = 506
Score = 145 bits (365), Expect = 4e-33
Identities = 75/139 (53%), Positives = 98/139 (70%)
Frame = +2
Query: 101 IDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTFA 280
+DS +F A LFEE S+ + SATT+I F + H H+ AI +FS++L +RPNE+TF
Sbjct: 26 LDSTTFHVACQLFEEMSDLTVASATTMIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFG 85
Query: 281 TVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYDP 460
T+++SS L + +GKQ HA A K+GLS +VFV SSLL LY K IE+A++AF DT P
Sbjct: 86 TLINSSAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHP 145
Query: 461 NVVSCTTMICGYLKNERFE 517
NVVS TT+ICGYLK RFE
Sbjct: 146 NVVSYTTLICGYLKRGRFE 164
Score = 85.1 bits (209), Expect = 5e-15
Identities = 46/138 (33%), Positives = 74/138 (53%)
Frame = +2
Query: 98 YIDSNSFSNARILFEETSNWDLVSATTIIGQFARNHHHQYAISMFSRLLYFNVRPNEYTF 277
Y+ F +A +F E ++VS ++G ++ H++ A++ F +L PNE TF
Sbjct: 157 YLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTF 216
Query: 278 ATVLHSSTCLKALSIGKQFHAIATKMGLSSNVFVASSLLHLYVKLGMIEEARRAFQDTYD 457
V+ ++ + +L IGK FHA A K + FV +SL+ Y K G +E++ F +
Sbjct: 217 PCVICAAANIASLGIGKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFK 276
Query: 458 PNVVSCTTMICGYLKNER 511
N+VS MICGY +N R
Sbjct: 277 RNIVSWNAMICGYAQNGR 294