BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00035047
         (586 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1,...   342   2e-92
emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]   342   2e-92
ref|XP_002316041.1| predicted protein [Populus trichocarpa] gi|2...   330   1e-88
ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus ...   328   5e-88
ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1,...   325   4e-87

>ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis
           vinifera] gi|296083248|emb|CBI22884.3| unnamed protein
           product [Vitis vinifera]
          Length = 651

 Score =  342 bits (878), Expect = 2e-92
 Identities = 165/192 (85%), Positives = 178/192 (92%)
 Frame = -3

Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405
           KLLKIGHA+NPRDPVLLQSLALLEYK STANL+RV+FRRASELDPRHQPVWIAWGWMEWK
Sbjct: 371 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWK 430

Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225
           EGNIATAR+ YQRAL IDST+ESAARCLQAWGVLE+R GNLSAARRLFRSSLNINSQSYI
Sbjct: 431 EGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYI 490

Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45
           TWMTWA+ EE QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN +
Sbjct: 491 TWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLD 550

Query: 44  QNSYFKGQDDLR 9
           QNSY++  D  R
Sbjct: 551 QNSYYRIPDSSR 562



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
 Frame = -3

Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384
           A    +P + Q  A+LE K      AR +F  A+  D RH   W  W  +E K+GNI  A
Sbjct: 208 ATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKA 267

Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204
           R    + L+    +E      Q   +LE +      AR LF+ +   N +S  +W+ WA 
Sbjct: 268 RHLLAKGLKYGGGNE---YIYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQ 324

Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPAL---DSIKKLL 54
           LE +Q N+  A ++    F++  +    N +      VF+  L   D  +KLL
Sbjct: 325 LEMQQENNHTARQL----FEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLL 373



 Score = 69.3 bits (168), Expect = 4e-10
 Identities = 36/114 (31%), Positives = 62/114 (54%)
 Frame = -3

Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360
           + Q+LALLE K +    AR +F++A++ +P+    W+AW  +E ++ N  TARQ +++A+
Sbjct: 284 IYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAV 343

Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198
           Q    +  A      WGV E  +GN    R+L +    +N +  +   + A LE
Sbjct: 344 QASPKNRFA---WHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLE 394


>emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]
          Length = 629

 Score =  342 bits (878), Expect = 2e-92
 Identities = 165/192 (85%), Positives = 178/192 (92%)
 Frame = -3

Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405
           KLLKIGHA+NPRDPVLLQSLALLEYK STANL+RV+FRRASELDPRHQPVWIAWGWMEWK
Sbjct: 371 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWK 430

Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225
           EGNIATAR+ YQRAL IDST+ESAARCLQAWGVLE+R GNLSAARRLFRSSLNINSQSYI
Sbjct: 431 EGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYI 490

Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45
           TWMTWA+ EE QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN +
Sbjct: 491 TWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLD 550

Query: 44  QNSYFKGQDDLR 9
           QNSY++  D  R
Sbjct: 551 QNSYYRIPDSSR 562



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
 Frame = -3

Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384
           A    +P + Q  A+LE K      AR +F  A+  D RH   W  W  +E K+GNI  A
Sbjct: 208 ATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKA 267

Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204
           R    + L+    +E      Q   +LE +      AR LF+ +   N +S  +W+ WA 
Sbjct: 268 RHLLAKGLKYGGGNE---YIYQTLXLLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQ 324

Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPAL---DSIKKLL 54
           LE +Q N+  A ++    F++  +    N +      VF+  L   D  +KLL
Sbjct: 325 LEMQQENNHTARQL----FEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLL 373



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 61/114 (53%)
 Frame = -3

Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360
           + Q+L LLE K +    AR +F++A++ +P+    W+AW  +E ++ N  TARQ +++A+
Sbjct: 284 IYQTLXLLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAV 343

Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198
           Q    +  A      WGV E  +GN    R+L +    +N +  +   + A LE
Sbjct: 344 QASPKNRFA---WHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLE 394


>ref|XP_002316041.1| predicted protein [Populus trichocarpa] gi|222865081|gb|EEF02212.1|
           predicted protein [Populus trichocarpa]
          Length = 546

 Score =  330 bits (845), Expect = 1e-88
 Identities = 158/192 (82%), Positives = 176/192 (91%)
 Frame = -3

Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405
           KLL IGHALNPRD VLLQSLALLEY+ STANLARV+FR+ASELDPRHQPVWIAWGWMEWK
Sbjct: 298 KLLTIGHALNPRDAVLLQSLALLEYRHSTANLARVLFRKASELDPRHQPVWIAWGWMEWK 357

Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225
           EGNI+TAR+ YQ+AL I++T+ESAARCLQAWGVLEQR GNLSAARRLFRSSLNINSQSY+
Sbjct: 358 EGNISTARELYQKALSINTTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYV 417

Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45
           TWMTWA LE++QGNSVRAEEIR+LYFQQRTEVVDD  WV GFLD+ DPA+DSIKKLLN +
Sbjct: 418 TWMTWAQLEDDQGNSVRAEEIRNLYFQQRTEVVDDVPWVAGFLDILDPAVDSIKKLLNMD 477

Query: 44  QNSYFKGQDDLR 9
           Q+ Y K Q+ LR
Sbjct: 478 QDPYKKAQEALR 489



 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 48/168 (28%), Positives = 79/168 (47%)
 Frame = -3

Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384
           A    +P + Q  A+LE K      AR +F  A+  D RH   W  W  +E K+GN+  A
Sbjct: 135 ATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRHVAAWHGWAILELKQGNVKKA 194

Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204
           RQ   + L+    +E      Q   +LE +      A+ LFR +   N +S  +W+ WA 
Sbjct: 195 RQLLAKGLKFCGGNEYV---YQTLALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQ 251

Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKK 60
           LE +Q N++ A ++    F++  +    N +      VF+  + +I+K
Sbjct: 252 LETQQENNLVARKL----FEKAVQASPKNRFAWHVWGVFEANIGNIEK 295



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 36/112 (32%), Positives = 61/112 (54%)
 Frame = -3

Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354
           Q+LALLE K +    A+ +FR+A++ +P+    W+AW  +E ++ N   AR+ +++A+Q 
Sbjct: 213 QTLALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQLETQQENNLVARKLFEKAVQA 272

Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198
              +  A      WGV E  IGN+  AR+L      +N +  +   + A LE
Sbjct: 273 SPKNRFA---WHVWGVFEANIGNIEKARKLLTIGHALNPRDAVLLQSLALLE 321


>ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus communis]
           gi|223541537|gb|EEF43086.1| pre-mRNA splicing factor,
           putative [Ricinus communis]
          Length = 648

 Score =  328 bits (840), Expect = 5e-88
 Identities = 157/182 (86%), Positives = 169/182 (92%)
 Frame = -3

Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405
           KLLKIGH LNPRDPVLLQSLALLEYK STANLARV+FRRASELDP+HQPVWIAWGWMEWK
Sbjct: 382 KLLKIGHTLNPRDPVLLQSLALLEYKHSTANLARVLFRRASELDPKHQPVWIAWGWMEWK 441

Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225
           EGNI+ AR+ YQRAL IDS+SESAA+CLQAWGVLEQR+GNLS ARRLFRSSLNINSQSYI
Sbjct: 442 EGNISAARELYQRALSIDSSSESAAKCLQAWGVLEQRVGNLSLARRLFRSSLNINSQSYI 501

Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45
           TWMTWA  EE+QGNSVRAEEIR+LYFQQRTEVVDD SWV G LD+ DPALDSIK+LL F+
Sbjct: 502 TWMTWAQFEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGVLDIIDPALDSIKRLLKFD 561

Query: 44  QN 39
           QN
Sbjct: 562 QN 563



 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 47/157 (29%), Positives = 74/157 (47%)
 Frame = -3

Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354
           Q  A+LE K      AR +F  A+  D RH   W  W  +E K+GNI  ARQ   + ++ 
Sbjct: 229 QCWAVLENKMGNIRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARQLLAKGIKF 288

Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVR 174
              +E      Q   +LE +      AR LFR +   N +S  +W+ WA +E +Q N++ 
Sbjct: 289 CGGNE---YIYQTLALLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQVEVQQENNLT 345

Query: 173 AEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIK 63
           A E+    FQ+  +    N +      VF+  + +I+
Sbjct: 346 AREL----FQKAVQASPKNRFAWHVWGVFEANIGNIE 378



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 39/114 (34%), Positives = 64/114 (56%)
 Frame = -3

Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360
           + Q+LALLE K +    AR +FR+A++ +P+    W+AW  +E ++ N  TAR+ +Q+A+
Sbjct: 295 IYQTLALLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQVEVQQENNLTARELFQKAV 354

Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198
           Q    +  A      WGV E  IGN+  AR+L +    +N +  +   + A LE
Sbjct: 355 QASPKNRFA---WHVWGVFEANIGNIEMARKLLKIGHTLNPRDPVLLQSLALLE 405



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/109 (30%), Positives = 53/109 (48%)
 Frame = -3

Query: 488 ARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQIDSTSESAARCLQAWG 309
           A VI ++           ++A G +  K+   A AR  Y++  Q  +T    A   Q W 
Sbjct: 175 AEVILQKCINYWSEDGRAYVALGKILTKQSKTAEARAVYEKGCQ--ATQGENAYIWQCWA 232

Query: 308 VLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVRAEEI 162
           VLE ++GN+  AR LF ++   + +    W  WA LE +QGN  +A ++
Sbjct: 233 VLENKMGNIRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARQL 281


>ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like
           [Cucumis sativus]
          Length = 636

 Score =  325 bits (832), Expect = 4e-87
 Identities = 155/184 (84%), Positives = 170/184 (92%)
 Frame = -3

Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405
           KLLKIGH LNPRDPVLLQSL LLEYK S+A+LARV+FRRASELDP+HQPVWIAWGWMEWK
Sbjct: 362 KLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWK 421

Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225
           EGNI  AR+ YQRAL IDS SESAARCLQAWGVLEQR+GNLSAARRL+RSSLNINSQSY+
Sbjct: 422 EGNIVKARELYQRALLIDSDSESAARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYV 481

Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45
           TWMTWAALEE+QGN++RAEEIR+LYFQQRTEVVDD SWV GFLDV DPALDSIK+LL  E
Sbjct: 482 TWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLE 541

Query: 44  QNSY 33
           Q+ +
Sbjct: 542 QDPF 545



 Score = 69.3 bits (168), Expect = 4e-10
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 31/173 (17%)
 Frame = -3

Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360
           + Q+LALLE K +    AR +F++A++ +P+    W+AW  +E +  N   AR+ +++A+
Sbjct: 275 IYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLLARELFEKAI 334

Query: 359 QIDSTSESAAR-------------------------------CLQAWGVLEQRIGNLSAA 273
           Q    +  A                                  LQ+ G+LE +  + S A
Sbjct: 335 QASPKNRFAWHIWGLFEANTGNIEKGMKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLA 394

Query: 272 RRLFRSSLNINSQSYITWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNS 114
           R LFR +  ++ +    W+ W  +E ++GN V+A   R+LY  QR  ++D +S
Sbjct: 395 RVLFRRASELDPKHQPVWIAWGWMEWKEGNIVKA---RELY--QRALLIDSDS 442



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 42/158 (26%), Positives = 73/158 (46%)
 Frame = -3

Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354
           Q  A+LE +      AR +F  A+  + +H   W  W  +E K+GNI  AR    + L+ 
Sbjct: 209 QCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKY 268

Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVR 174
              +E   + L    +LE +      AR LF+ +   N +S  +W+ WA LE +  N++ 
Sbjct: 269 CGGNEYIYQTL---ALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLL 325

Query: 173 AEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKK 60
           A E+    F++  +    N +      +F+    +I+K
Sbjct: 326 AREL----FEKAIQASPKNRFAWHIWGLFEANTGNIEK 359



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
 Frame = -3

Query: 551 RDPVLLQSLALLEYKESTANL----ARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384
           R  ++   LAL   K    N     A+ + ++     P     ++A G M  K+   A A
Sbjct: 130 RPLIINLDLALYRAKMLARNFQYDEAQQVLQKCINKWPEDGRAYVALGKMLGKQMKAAEA 189

Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204
           +  Y+R  Q  +T    +   Q W VLE R+GN+  AR LF ++   N +    W  WA 
Sbjct: 190 KAVYERGCQ--ATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAV 247

Query: 203 LEEEQGNSVRAEEI 162
           LE +QGN  +A  +
Sbjct: 248 LELKQGNIKKARNL 261