BLASTX nr result
ID: Coptis24_contig00035047
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00035047 (586 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1,... 342 2e-92 emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera] 342 2e-92 ref|XP_002316041.1| predicted protein [Populus trichocarpa] gi|2... 330 1e-88 ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus ... 328 5e-88 ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1,... 325 4e-87 >ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis vinifera] gi|296083248|emb|CBI22884.3| unnamed protein product [Vitis vinifera] Length = 651 Score = 342 bits (878), Expect = 2e-92 Identities = 165/192 (85%), Positives = 178/192 (92%) Frame = -3 Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405 KLLKIGHA+NPRDPVLLQSLALLEYK STANL+RV+FRRASELDPRHQPVWIAWGWMEWK Sbjct: 371 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWK 430 Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225 EGNIATAR+ YQRAL IDST+ESAARCLQAWGVLE+R GNLSAARRLFRSSLNINSQSYI Sbjct: 431 EGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYI 490 Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45 TWMTWA+ EE QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN + Sbjct: 491 TWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLD 550 Query: 44 QNSYFKGQDDLR 9 QNSY++ D R Sbjct: 551 QNSYYRIPDSSR 562 Score = 73.2 bits (178), Expect = 3e-11 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 3/173 (1%) Frame = -3 Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384 A +P + Q A+LE K AR +F A+ D RH W W +E K+GNI A Sbjct: 208 ATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKA 267 Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204 R + L+ +E Q +LE + AR LF+ + N +S +W+ WA Sbjct: 268 RHLLAKGLKYGGGNE---YIYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQ 324 Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPAL---DSIKKLL 54 LE +Q N+ A ++ F++ + N + VF+ L D +KLL Sbjct: 325 LEMQQENNHTARQL----FEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLL 373 Score = 69.3 bits (168), Expect = 4e-10 Identities = 36/114 (31%), Positives = 62/114 (54%) Frame = -3 Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360 + Q+LALLE K + AR +F++A++ +P+ W+AW +E ++ N TARQ +++A+ Sbjct: 284 IYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAV 343 Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198 Q + A WGV E +GN R+L + +N + + + A LE Sbjct: 344 QASPKNRFA---WHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLE 394 >emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera] Length = 629 Score = 342 bits (878), Expect = 2e-92 Identities = 165/192 (85%), Positives = 178/192 (92%) Frame = -3 Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405 KLLKIGHA+NPRDPVLLQSLALLEYK STANL+RV+FRRASELDPRHQPVWIAWGWMEWK Sbjct: 371 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWK 430 Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225 EGNIATAR+ YQRAL IDST+ESAARCLQAWGVLE+R GNLSAARRLFRSSLNINSQSYI Sbjct: 431 EGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYI 490 Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45 TWMTWA+ EE QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN + Sbjct: 491 TWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLD 550 Query: 44 QNSYFKGQDDLR 9 QNSY++ D R Sbjct: 551 QNSYYRIPDSSR 562 Score = 72.8 bits (177), Expect = 4e-11 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 3/173 (1%) Frame = -3 Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384 A +P + Q A+LE K AR +F A+ D RH W W +E K+GNI A Sbjct: 208 ATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKA 267 Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204 R + L+ +E Q +LE + AR LF+ + N +S +W+ WA Sbjct: 268 RHLLAKGLKYGGGNE---YIYQTLXLLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQ 324 Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPAL---DSIKKLL 54 LE +Q N+ A ++ F++ + N + VF+ L D +KLL Sbjct: 325 LEMQQENNHTARQL----FEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLL 373 Score = 67.4 bits (163), Expect = 2e-09 Identities = 35/114 (30%), Positives = 61/114 (53%) Frame = -3 Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360 + Q+L LLE K + AR +F++A++ +P+ W+AW +E ++ N TARQ +++A+ Sbjct: 284 IYQTLXLLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAV 343 Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198 Q + A WGV E +GN R+L + +N + + + A LE Sbjct: 344 QASPKNRFA---WHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLE 394 >ref|XP_002316041.1| predicted protein [Populus trichocarpa] gi|222865081|gb|EEF02212.1| predicted protein [Populus trichocarpa] Length = 546 Score = 330 bits (845), Expect = 1e-88 Identities = 158/192 (82%), Positives = 176/192 (91%) Frame = -3 Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405 KLL IGHALNPRD VLLQSLALLEY+ STANLARV+FR+ASELDPRHQPVWIAWGWMEWK Sbjct: 298 KLLTIGHALNPRDAVLLQSLALLEYRHSTANLARVLFRKASELDPRHQPVWIAWGWMEWK 357 Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225 EGNI+TAR+ YQ+AL I++T+ESAARCLQAWGVLEQR GNLSAARRLFRSSLNINSQSY+ Sbjct: 358 EGNISTARELYQKALSINTTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYV 417 Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45 TWMTWA LE++QGNSVRAEEIR+LYFQQRTEVVDD WV GFLD+ DPA+DSIKKLLN + Sbjct: 418 TWMTWAQLEDDQGNSVRAEEIRNLYFQQRTEVVDDVPWVAGFLDILDPAVDSIKKLLNMD 477 Query: 44 QNSYFKGQDDLR 9 Q+ Y K Q+ LR Sbjct: 478 QDPYKKAQEALR 489 Score = 78.6 bits (192), Expect = 7e-13 Identities = 48/168 (28%), Positives = 79/168 (47%) Frame = -3 Query: 563 ALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384 A +P + Q A+LE K AR +F A+ D RH W W +E K+GN+ A Sbjct: 135 ATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRHVAAWHGWAILELKQGNVKKA 194 Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204 RQ + L+ +E Q +LE + A+ LFR + N +S +W+ WA Sbjct: 195 RQLLAKGLKFCGGNEYV---YQTLALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQ 251 Query: 203 LEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKK 60 LE +Q N++ A ++ F++ + N + VF+ + +I+K Sbjct: 252 LETQQENNLVARKL----FEKAVQASPKNRFAWHVWGVFEANIGNIEK 295 Score = 67.0 bits (162), Expect = 2e-09 Identities = 36/112 (32%), Positives = 61/112 (54%) Frame = -3 Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354 Q+LALLE K + A+ +FR+A++ +P+ W+AW +E ++ N AR+ +++A+Q Sbjct: 213 QTLALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQLETQQENNLVARKLFEKAVQA 272 Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198 + A WGV E IGN+ AR+L +N + + + A LE Sbjct: 273 SPKNRFA---WHVWGVFEANIGNIEKARKLLTIGHALNPRDAVLLQSLALLE 321 >ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus communis] gi|223541537|gb|EEF43086.1| pre-mRNA splicing factor, putative [Ricinus communis] Length = 648 Score = 328 bits (840), Expect = 5e-88 Identities = 157/182 (86%), Positives = 169/182 (92%) Frame = -3 Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405 KLLKIGH LNPRDPVLLQSLALLEYK STANLARV+FRRASELDP+HQPVWIAWGWMEWK Sbjct: 382 KLLKIGHTLNPRDPVLLQSLALLEYKHSTANLARVLFRRASELDPKHQPVWIAWGWMEWK 441 Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225 EGNI+ AR+ YQRAL IDS+SESAA+CLQAWGVLEQR+GNLS ARRLFRSSLNINSQSYI Sbjct: 442 EGNISAARELYQRALSIDSSSESAAKCLQAWGVLEQRVGNLSLARRLFRSSLNINSQSYI 501 Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45 TWMTWA EE+QGNSVRAEEIR+LYFQQRTEVVDD SWV G LD+ DPALDSIK+LL F+ Sbjct: 502 TWMTWAQFEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGVLDIIDPALDSIKRLLKFD 561 Query: 44 QN 39 QN Sbjct: 562 QN 563 Score = 76.3 bits (186), Expect = 4e-12 Identities = 47/157 (29%), Positives = 74/157 (47%) Frame = -3 Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354 Q A+LE K AR +F A+ D RH W W +E K+GNI ARQ + ++ Sbjct: 229 QCWAVLENKMGNIRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARQLLAKGIKF 288 Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVR 174 +E Q +LE + AR LFR + N +S +W+ WA +E +Q N++ Sbjct: 289 CGGNE---YIYQTLALLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQVEVQQENNLT 345 Query: 173 AEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIK 63 A E+ FQ+ + N + VF+ + +I+ Sbjct: 346 AREL----FQKAVQASPKNRFAWHVWGVFEANIGNIE 378 Score = 73.2 bits (178), Expect = 3e-11 Identities = 39/114 (34%), Positives = 64/114 (56%) Frame = -3 Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360 + Q+LALLE K + AR +FR+A++ +P+ W+AW +E ++ N TAR+ +Q+A+ Sbjct: 295 IYQTLALLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQVEVQQENNLTARELFQKAV 354 Query: 359 QIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALE 198 Q + A WGV E IGN+ AR+L + +N + + + A LE Sbjct: 355 QASPKNRFA---WHVWGVFEANIGNIEMARKLLKIGHTLNPRDPVLLQSLALLE 405 Score = 57.0 bits (136), Expect = 2e-06 Identities = 33/109 (30%), Positives = 53/109 (48%) Frame = -3 Query: 488 ARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQIDSTSESAARCLQAWG 309 A VI ++ ++A G + K+ A AR Y++ Q +T A Q W Sbjct: 175 AEVILQKCINYWSEDGRAYVALGKILTKQSKTAEARAVYEKGCQ--ATQGENAYIWQCWA 232 Query: 308 VLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVRAEEI 162 VLE ++GN+ AR LF ++ + + W WA LE +QGN +A ++ Sbjct: 233 VLENKMGNIRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARQL 281 >ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cucumis sativus] Length = 636 Score = 325 bits (832), Expect = 4e-87 Identities = 155/184 (84%), Positives = 170/184 (92%) Frame = -3 Query: 584 KLLKIGHALNPRDPVLLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWK 405 KLLKIGH LNPRDPVLLQSL LLEYK S+A+LARV+FRRASELDP+HQPVWIAWGWMEWK Sbjct: 362 KLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWK 421 Query: 404 EGNIATARQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYI 225 EGNI AR+ YQRAL IDS SESAARCLQAWGVLEQR+GNLSAARRL+RSSLNINSQSY+ Sbjct: 422 EGNIVKARELYQRALLIDSDSESAARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYV 481 Query: 224 TWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFE 45 TWMTWAALEE+QGN++RAEEIR+LYFQQRTEVVDD SWV GFLDV DPALDSIK+LL E Sbjct: 482 TWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLE 541 Query: 44 QNSY 33 Q+ + Sbjct: 542 QDPF 545 Score = 69.3 bits (168), Expect = 4e-10 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 31/173 (17%) Frame = -3 Query: 539 LLQSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRAL 360 + Q+LALLE K + AR +F++A++ +P+ W+AW +E + N AR+ +++A+ Sbjct: 275 IYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLLARELFEKAI 334 Query: 359 QIDSTSESAAR-------------------------------CLQAWGVLEQRIGNLSAA 273 Q + A LQ+ G+LE + + S A Sbjct: 335 QASPKNRFAWHIWGLFEANTGNIEKGMKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLA 394 Query: 272 RRLFRSSLNINSQSYITWMTWAALEEEQGNSVRAEEIRDLYFQQRTEVVDDNS 114 R LFR + ++ + W+ W +E ++GN V+A R+LY QR ++D +S Sbjct: 395 RVLFRRASELDPKHQPVWIAWGWMEWKEGNIVKA---RELY--QRALLIDSDS 442 Score = 65.5 bits (158), Expect = 6e-09 Identities = 42/158 (26%), Positives = 73/158 (46%) Frame = -3 Query: 533 QSLALLEYKESTANLARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATARQFYQRALQI 354 Q A+LE + AR +F A+ + +H W W +E K+GNI AR + L+ Sbjct: 209 QCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKY 268 Query: 353 DSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAALEEEQGNSVR 174 +E + L +LE + AR LF+ + N +S +W+ WA LE + N++ Sbjct: 269 CGGNEYIYQTL---ALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLL 325 Query: 173 AEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKK 60 A E+ F++ + N + +F+ +I+K Sbjct: 326 AREL----FEKAIQASPKNRFAWHIWGLFEANTGNIEK 359 Score = 59.3 bits (142), Expect = 5e-07 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Frame = -3 Query: 551 RDPVLLQSLALLEYKESTANL----ARVIFRRASELDPRHQPVWIAWGWMEWKEGNIATA 384 R ++ LAL K N A+ + ++ P ++A G M K+ A A Sbjct: 130 RPLIINLDLALYRAKMLARNFQYDEAQQVLQKCINKWPEDGRAYVALGKMLGKQMKAAEA 189 Query: 383 RQFYQRALQIDSTSESAARCLQAWGVLEQRIGNLSAARRLFRSSLNINSQSYITWMTWAA 204 + Y+R Q +T + Q W VLE R+GN+ AR LF ++ N + W WA Sbjct: 190 KAVYERGCQ--ATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAV 247 Query: 203 LEEEQGNSVRAEEI 162 LE +QGN +A + Sbjct: 248 LELKQGNIKKARNL 261