BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034969
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...    64   1e-08
ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    62   5e-08
ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group] g...    61   8e-08
emb|CBI17575.3| unnamed protein product [Vitis vinifera]               60   2e-07
ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07

>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/85 (37%), Positives = 44/85 (51%)
 Frame = +3

Query: 57  KLLANSVKSPFLESVYRISNTLFKYKHWCDSLEMELEGLDVMWTSYIVNQVLKRVPDSVL 236
           KL        ++ +V      + KY  W +S E +L  L + W SY VNQVLK  P    
Sbjct: 54  KLKLKDEPREYMRNVIGKIYNMLKYSSW-ESAEQDLNNLSMKWDSYTVNQVLKSHPPMEK 112

Query: 237 GFCFYNWVELRLGFVHDYYTYKSMI 311
            + F+NWV    GF HD+YTY +M+
Sbjct: 113 AWLFFNWVSSLRGFKHDHYTYTTML 137


>ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g01390-like [Glycine max]
          Length = 545

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 31/69 (44%), Positives = 40/69 (57%)
 Frame = +3

Query: 105 RISNTLFKYKHWCDSLEMELEGLDVMWTSYIVNQVLKRVPDSVLGFCFYNWVELRLGFVH 284
           +I  TL KY  W +S E EL  + + W SY VNQVLK  P     + F+NW     GF H
Sbjct: 47  KIYKTL-KYSSW-ESAEQELNNMSLRWDSYTVNQVLKSHPPMEKAWLFFNWASSLRGFKH 104

Query: 285 DYYTYKSMI 311
           D+YTY +M+
Sbjct: 105 DHYTYTTML 113


>ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
           gi|33146488|dbj|BAC79597.1| membrane-associated
           salt-inducible protein-like [Oryza sativa Japonica
           Group] gi|50509161|dbj|BAD30301.1| membrane-associated
           salt-inducible protein-like [Oryza sativa Japonica
           Group] gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza
           sativa Japonica Group] gi|215678726|dbj|BAG95163.1|
           unnamed protein product [Oryza sativa Japonica Group]
           gi|222637719|gb|EEE67851.1| hypothetical protein
           OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/73 (43%), Positives = 44/73 (60%)
 Frame = +3

Query: 138 WCDSLEMELEGLDVMWTSYIVNQVLKRVPDSVLGFCFYNWVELRLGFVHDYYTYKSMICL 317
           W +S+E+ELEGL V    ++VN+VL+ + DS +   FY W E R GF H+ +    +I L
Sbjct: 75  WSESVELELEGLHVELDPFVVNKVLRGLLDSGMAVRFYWWAESRPGFYHNNFAIAYIISL 134

Query: 318 LIRDCRFEDLSEF 356
           L  D  F  LSEF
Sbjct: 135 LFVDDNFALLSEF 147


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +3

Query: 120 LFKYKHWCDSLEMELEGLDVMWTSYIVNQVLKRVPDSVLGFCFYNWVELRLGFVHDYYTY 299
           + +Y  W DS + +LE L + W SY VNQVLK  P     + F+NW     GF HD +TY
Sbjct: 137 ILRYLTW-DSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTY 195

Query: 300 KSMICLLIRDCRFEDLS 350
            +M+ +     R E ++
Sbjct: 196 TTMLDIFGEARRIESMN 212


>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +3

Query: 120 LFKYKHWCDSLEMELEGLDVMWTSYIVNQVLKRVPDSVLGFCFYNWVELRLGFVHDYYTY 299
           + +Y  W DS + +LE L + W SY VNQVLK  P     + F+NW     GF HD +TY
Sbjct: 11  ILRYLTW-DSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTY 69

Query: 300 KSMICLLIRDCRFEDLS 350
            +M+ +     R E ++
Sbjct: 70  TTMLDIFGEARRIESMN 86