BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034960
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]   107   1e-21
ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containi...    98   6e-19
ref|XP_003617308.1| Auxin response factor [Medicago truncatula] ...    97   2e-18
ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containi...    93   3e-17

>ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/77 (63%), Positives = 65/77 (84%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G+ ++AK+VM+E ML +GC PDIFTYN+LILGLCK G+L SA EL+ EM +KG +PNV++
Sbjct: 385 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT 444

Query: 59  YTILVEGFCKVGRLDEA 9
           YTIL++ FCK GRL+EA
Sbjct: 445 YTILIDRFCKEGRLEEA 461



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 47/68 (69%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           + E ML MGC PD+ T+N  I GLCK+  +  A++L+  M+++G  PN  +Y +L+ G C
Sbjct: 292 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 351

Query: 32  KVGRLDEA 9
           ++G++DEA
Sbjct: 352 RMGKVDEA 359



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/77 (41%), Positives = 47/77 (61%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G  EK  + ++E M+  G  P+  + N LI GLC+ G +  A E LR+MI +G+ P++V+
Sbjct: 596 GNIEKGLA-LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 654

Query: 59  YTILVEGFCKVGRLDEA 9
           Y  L+ G CK GR  EA
Sbjct: 655 YNSLINGLCKTGRAQEA 671



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           M+  M   GC+PDIFT+NSLI GLCK+     A  L ++M+++GV  N ++Y  L+  F 
Sbjct: 499 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 558

Query: 32  KVGRLDEA 9
           + G + EA
Sbjct: 559 RRGAMQEA 566



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG  + A   + + M+  G  PDI TYNSLI GLCK G    A  L  ++ ++G+ P+ +
Sbjct: 630 TGNIQHALEFLRD-MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 688

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+   CK G  D+A
Sbjct: 689 TYNTLISWHCKEGMFDDA 706



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = -3

Query: 200 MLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFCKVGR 21
           ML  GC  D  TYN LI  LC+ G +     L  +M+ KG+ PN +S  IL+ G C+ G 
Sbjct: 573 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGN 632

Query: 20  LDEA 9
           +  A
Sbjct: 633 IQHA 636


>emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/77 (63%), Positives = 65/77 (84%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G+ ++AK+VM+E ML +GC PDIFTYN+LILGLCK G+L SA EL+ EM +KG +PNV++
Sbjct: 367 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT 426

Query: 59  YTILVEGFCKVGRLDEA 9
           YTIL++ FCK GRL+EA
Sbjct: 427 YTILIDRFCKEGRLEEA 443



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 47/68 (69%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           + E ML MGC PD+ T+N  I GLCK+  +  A++L+  M+++G  PN  +Y +L+ G C
Sbjct: 274 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLC 333

Query: 32  KVGRLDEA 9
           ++G++DEA
Sbjct: 334 RMGKVDEA 341



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/77 (41%), Positives = 47/77 (61%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G  EK  + ++E M+  G  P+  + N LI GLC+ G +  A E LR+MI +G+ P++V+
Sbjct: 578 GNIEKGLA-LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 636

Query: 59  YTILVEGFCKVGRLDEA 9
           Y  L+ G CK GR  EA
Sbjct: 637 YNSLINGLCKTGRAQEA 653



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           M+  M   GC+PDIFT+NSLI GLCK+     A  L ++M+++GV  N ++Y  L+  F 
Sbjct: 481 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 540

Query: 32  KVGRLDEA 9
           + G + EA
Sbjct: 541 RRGAMQEA 548



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG  + A   + + M+  G  PDI TYNSLI GLCK G    A  L  ++ ++G+ P+ +
Sbjct: 612 TGNIQHALEFLRD-MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 670

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+   CK G  D+A
Sbjct: 671 TYNTLISWHCKEGMFDDA 688



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = -3

Query: 200 MLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFCKVGR 21
           ML  GC  D  TYN LI  LC+ G +     L  +M+ KG+ PN +S  IL+ G C+ G 
Sbjct: 555 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGN 614

Query: 20  LDEA 9
           +  A
Sbjct: 615 IQHA 618


>ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/68 (66%), Positives = 57/68 (83%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           M+E ML +GC PDIFTYN+LILGLCK G+L SA EL+ EM +KG +PNV++YTIL++ FC
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 32  KVGRLDEA 9
           K GRL+EA
Sbjct: 61  KEGRLEEA 68



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/77 (41%), Positives = 47/77 (61%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G  EK  + ++E M+  G  P+  + N LI GLC+ G +  A E LR+MI +G+ P++V+
Sbjct: 203 GNIEKGLA-LFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 261

Query: 59  YTILVEGFCKVGRLDEA 9
           Y  L+ G CK GR  EA
Sbjct: 262 YNSLINGLCKTGRAQEA 278



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           M+  M   GC+PDIFT+NSLI GLCK+     A  L ++M+++GV  N ++Y  L+  F 
Sbjct: 106 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 165

Query: 32  KVGRLDEA 9
           + G + EA
Sbjct: 166 RRGAMQEA 173



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG  + A   + + M+  G  PDI TYNSLI GLCK G    A  L  ++ ++G+ P+ +
Sbjct: 237 TGNIQHALEFLRD-MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAI 295

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+   CK G  D+A
Sbjct: 296 TYNTLISWHCKEGMFDDA 313



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = -3

Query: 200 MLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFCKVGR 21
           ML  GC  D  TYN LI  LC+ G +     L  +M+ KG+ PN +S  IL+ G C+ G 
Sbjct: 180 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGN 239

Query: 20  LDEA 9
           +  A
Sbjct: 240 IQHA 243


>ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
           gi|355518643|gb|AET00267.1| Auxin response factor
           [Medicago truncatula]
          Length = 948

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 44/79 (55%), Positives = 61/79 (77%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           +G+FE+AK ++Y+ M+  G EPD FT+N +I GLCK G+L SA E L EM+ KG +PNV+
Sbjct: 349 SGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVI 408

Query: 62  SYTILVEGFCKVGRLDEAS 6
           +YTIL++GFCK G  +EAS
Sbjct: 409 TYTILIDGFCKQGHFEEAS 427



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           MY  M   GC+PDI+T+NSLI GLCK   +  A  L R+M+++GV  N V+Y  L+  F 
Sbjct: 464 MYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFL 523

Query: 32  KVGRLDEA 9
           ++  + +A
Sbjct: 524 RLELIQQA 531



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           + E M  MGCEPD+ T+N +I GLCK G +  A++L   M+++    + +    L+ G C
Sbjct: 257 LLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLC 316

Query: 32  KVGRLDEA 9
           ++G++DEA
Sbjct: 317 RMGKVDEA 324



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/78 (38%), Positives = 43/78 (55%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG+   A   + + M+  G  PDI TYNSLI GLCK+G    A  L   +  KG+ P+ V
Sbjct: 595 TGKVNDALQFLRD-MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAV 653

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+  +C  G  ++A
Sbjct: 654 TYNTLISRYCYEGLFNDA 671



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG  EK   ++ E M      P I + N LI   C+ G +  A + LR+MI +G+ P++V
Sbjct: 560 TGATEKCLGLI-EQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIV 618

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+ G CK+GR  EA
Sbjct: 619 TYNSLINGLCKMGRFQEA 636


>ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 43/80 (53%), Positives = 61/80 (76%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           +G+FE+AK ++Y  M+  G EPD +T+N +I GL K G+L SA ELL EM+ K  +PNV+
Sbjct: 354 SGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVI 413

Query: 62  SYTILVEGFCKVGRLDEASD 3
           +YTIL+ GFCK GRL+EA++
Sbjct: 414 TYTILINGFCKQGRLEEAAE 433



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/80 (41%), Positives = 50/80 (62%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG  EK    ++E ML  G  P I + N LI GLC+ G +  A + L++MI +G+ P++V
Sbjct: 565 TGAVEKGLG-LFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIV 623

Query: 62  SYTILVEGFCKVGRLDEASD 3
           +Y  L+ G CK+G + EAS+
Sbjct: 624 TYNSLINGLCKMGHVQEASN 643



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 46/68 (67%)
 Frame = -3

Query: 212 MYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFC 33
           + E M  M CEPD+ T+N +I GLC+ G +  A++LL  M+++G   + ++Y  L+ G C
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 32  KVGRLDEA 9
           ++G++DEA
Sbjct: 322 RMGQVDEA 329



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = -3

Query: 242 TGQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVV 63
           TG+   A   + + M+  G  PDI TYNSLI GLCK+G +  AS L  ++  +G++P+ +
Sbjct: 600 TGKVNDALKFLQD-MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAI 658

Query: 62  SYTILVEGFCKVGRLDEA 9
           +Y  L+   C  G  ++A
Sbjct: 659 TYNTLISRHCHEGMFNDA 676



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/64 (42%), Positives = 38/64 (59%)
 Frame = -3

Query: 200 MLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVSYTILVEGFCKVGR 21
           ML  GC  D  TYN LI  LCK G +     L  EM+ KG+ P ++S  IL+ G C+ G+
Sbjct: 543 MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK 602

Query: 20  LDEA 9
           +++A
Sbjct: 603 VNDA 606



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/77 (40%), Positives = 43/77 (55%)
 Frame = -3

Query: 239 GQFEKAKSVMYEFMLPMGCEPDIFTYNSLILGLCKLGFLGSASELLREMIMKGVKPNVVS 60
           G  E+A  +  E M   GC+PDI+T+NSLI GLCK   +  A  L  +M ++GV  N V+
Sbjct: 461 GNIEEALQLFGE-MSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVT 519

Query: 59  YTILVEGFCKVGRLDEA 9
           Y  LV  F     + +A
Sbjct: 520 YNTLVHAFLMRDSIQQA 536