BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034937
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi...   116   5e-37
emb|CBI24516.3| unnamed protein product [Vitis vinifera]              116   6e-37
ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containi...   100   6e-32
gb|EEC66478.1| hypothetical protein OsI_32564 [Oryza sativa Indi...    98   1e-29
gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sati...    98   3e-29

>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score =  116 bits (290), Expect(2) = 5e-37
 Identities = 58/107 (54%), Positives = 75/107 (70%)
 Frame = -1

Query: 516 VAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHLFH 337
           VAIYDSIIG L + KR+ E E +F+ MLE G  PD  +Y T+I+ YS N RAI+A  LF 
Sbjct: 584 VAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFD 643

Query: 336 VMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 196
            MIE GF+P +H+YT +I+GL+K+NM +K C YL  +L DG V  TV
Sbjct: 644 KMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTV 690



 Score = 63.2 bits (152), Expect(2) = 5e-37
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = -3

Query: 196 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRR-YHV 26
           +Y+ LINQ  +KGE+ FAFRL DLM RN IE D++T  +LVSGV  NI+   RR YHV
Sbjct: 691 LYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHV 748


>emb|CBI24516.3| unnamed protein product [Vitis vinifera]
          Length = 970

 Score =  116 bits (290), Expect(2) = 6e-37
 Identities = 58/107 (54%), Positives = 75/107 (70%)
 Frame = -1

Query: 516 VAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHLFH 337
           VAIYDSIIG L + KR+ E E +F+ MLE G  PD  +Y T+I+ YS N RAI+A  LF 
Sbjct: 464 VAIYDSIIGCLSRRKRILEAENVFKMMLEAGVDPDAIIYVTMISGYSKNRRAIEARQLFD 523

Query: 336 VMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 196
            MIE GF+P +H+YT +I+GL+K+NM +K C YL  +L DG V  TV
Sbjct: 524 KMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFVPNTV 570



 Score = 63.2 bits (152), Expect(2) = 6e-37
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = -3

Query: 196 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRR-YHV 26
           +Y+ LINQ  +KGE+ FAFRL DLM RN IE D++T  +LVSGV  NI+   RR YHV
Sbjct: 571 LYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWYHV 628


>ref|XP_003571953.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Brachypodium distachyon]
          Length = 926

 Score =  100 bits (250), Expect(2) = 6e-32
 Identities = 49/107 (45%), Positives = 66/107 (61%)
 Frame = -1

Query: 516 VAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHLFH 337
           +A+YDSII  LC+     E E+  R+M+E G VPD  +Y+TL+N YS       AC +F 
Sbjct: 499 IAVYDSIIACLCRLGHFKEAEFTLRQMIEAGLVPDEVIYTTLLNGYSTMRHTKAACRVFD 558

Query: 336 VMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 196
            M+ERG +P +H Y  LINGL+K N   KA  YLE +L++G    TV
Sbjct: 559 EMLERGLQPGSHAYGALINGLVKDNKIRKALHYLERMLEEGFATQTV 605



 Score = 61.6 bits (148), Expect(2) = 6e-32
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = -3

Query: 196 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRR 35
           IY++LINQ  +KGE      L DLM +NH+E DL+T+G+LV+G+C NI R   R
Sbjct: 606 IYTMLINQFFRKGEEWLGLDLVDLMMKNHVEPDLITYGALVTGICRNIDRRDMR 659


>gb|EEC66478.1| hypothetical protein OsI_32564 [Oryza sativa Indica Group]
          Length = 481

 Score = 97.8 bits (242), Expect(2) = 1e-29
 Identities = 47/107 (43%), Positives = 68/107 (63%)
 Frame = -1

Query: 516 VAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHLFH 337
           +A+YDSII  LC+ +RL E E   R+M+  G  PD  +Y++LIN YS+  +  + C +F 
Sbjct: 55  IAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFD 114

Query: 336 VMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 196
            M++RG +P  H Y  LINGL+K N   KA  YLE +L++G+   TV
Sbjct: 115 EMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTV 161



 Score = 57.0 bits (136), Expect(2) = 1e-29
 Identities = 28/65 (43%), Positives = 45/65 (69%)
 Frame = -3

Query: 196 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRRYHVVDR 17
           IY++LINQ  +KG+V     L  LM + ++  DL+T+G+LV+G+C NI+R G R   +D+
Sbjct: 162 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVAGICRNIARRGMR-PSLDK 220

Query: 16  RSKKA 2
           + K+A
Sbjct: 221 KLKEA 225


>gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
           gi|31429883|gb|AAP51872.1| hypothetical protein
           LOC_Os10g02650 [Oryza sativa Japonica Group]
          Length = 949

 Score = 97.8 bits (242), Expect(2) = 3e-29
 Identities = 47/107 (43%), Positives = 68/107 (63%)
 Frame = -1

Query: 516 VAIYDSIIGSLCKEKRLPEGEWIFRRMLEVGAVPDGDLYSTLINDYSINGRAIDACHLFH 337
           +A+YDSII  LC+ +RL E E   R+M+  G  PD  +Y++LIN YS+  +  + C +F 
Sbjct: 503 IAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFD 562

Query: 336 VMIERGFRPCAHTYTGLINGLMKKNMTEKACKYLEMVLDDGLVLGTV 196
            M++RG +P  H Y  LINGL+K N   KA  YLE +L++G+   TV
Sbjct: 563 EMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTV 609



 Score = 55.8 bits (133), Expect(2) = 3e-29
 Identities = 25/54 (46%), Positives = 38/54 (70%)
 Frame = -3

Query: 196 IYSILINQSCKKGEVSFAFRLADLMKRNHIERDLMTFGSLVSGVCSNISRAGRR 35
           IY++LINQ  +KG+V     L  LM + ++  DL+T+G+LV+G+C NI+R G R
Sbjct: 610 IYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVTGICRNIARRGMR 663