BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034887
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...   109   2e-22
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   108   5e-22
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]     107   8e-22
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   106   2e-21
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   106   2e-21

>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
            copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  109 bits (273), Expect = 2e-22
 Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = -3

Query: 364  FMESPHQSHLKAAKRILRYIQGTQDYGTFYSTSHSSALVGYTDSDWAGDIEKRKSTSGYA 185
            FME+P   HLKAAKRIL Y++GT D+G FYS S++  LVG+ DSD+AGD++ RKST+G+ 
Sbjct: 844  FMEAPTSPHLKAAKRILCYLKGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFV 903

Query: 184  FHMGSGVFSRSSKKQ--QXXXXXXXXXXXXXXXXXXAVWL*RMFEELKQKQEISTKIVCD 11
            F MG  VF+ SSKKQ                     A+WL R+ EEL+  Q+ STKI  D
Sbjct: 904  FFMGDCVFTWSSKKQGIVTLSTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVD 963

Query: 10   NKS 2
            N+S
Sbjct: 964  NRS 966


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  108 bits (270), Expect = 5e-22
 Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
 Frame = -3

Query: 370  SIFMESPHQSHLKAAKRILRYIQGTQDYGTFYSTSHSSALVGYTDSDWAGDIEKRKSTSG 191
            S +M SP Q +  AAKR+LRYI+GT DYG +Y     S L+GYTDSDWAG ++  K TSG
Sbjct: 949  SRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSG 1008

Query: 190  YAFHMGSGVFSRSSKKQQ--XXXXXXXXXXXXXXXXXXAVWL*RMFEELKQKQEISTKIV 17
            YAF +GSG+ S S+KKQ                      VWL R+ E+L +KQ   T I 
Sbjct: 1009 YAFSLGSGMCSWSTKKQNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIY 1068

Query: 16   CDNKS 2
            CD+KS
Sbjct: 1069 CDSKS 1073


>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1136

 Score =  107 bits (268), Expect = 8e-22
 Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
 Frame = -3

Query: 370  SIFMESPHQSHLKAAKRILRYIQGTQDYGTFYSTSHSSALVGYTDSDWAGDIEKRKSTSG 191
            S +M SP Q +  AAKR+LRYI+GT  YG +Y     S L+GYTDSDWAG ++  KSTSG
Sbjct: 943  SRYMSSPSQLNFTAAKRVLRYIKGTAYYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSG 1002

Query: 190  YAFHMGSGVFSRSSKKQQ--XXXXXXXXXXXXXXXXXXAVWL*RMFEELKQKQEISTKIV 17
            YAF +GSG++S S+KKQ                      VWL R+ E+L +KQ   T I 
Sbjct: 1003 YAFSLGSGMWSWSTKKQNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIY 1062

Query: 16   CDNKS 2
            CD+KS
Sbjct: 1063 CDSKS 1067


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  106 bits (265), Expect = 2e-21
 Identities = 58/125 (46%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
 Frame = -3

Query: 370  SIFMESPHQSHLKAAKRILRYIQGTQDYGTFYSTSHSSALVGYTDSDWAGDIEKRKSTSG 191
            S +ME P  +H KAAKRILRYI+GT ++G  YST+    LVGY+DSDW GD++ RKSTSG
Sbjct: 1151 SRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSG 1210

Query: 190  YAFHMGSGVFSRSSKKQQ--XXXXXXXXXXXXXXXXXXAVWL*RMFEELKQKQEISTKIV 17
            + F++G   F+  SKKQ                     A+WL  + +EL   QE  TKI 
Sbjct: 1211 FVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIF 1270

Query: 16   CDNKS 2
             DNKS
Sbjct: 1271 VDNKS 1275


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  106 bits (265), Expect = 2e-21
 Identities = 58/125 (46%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
 Frame = -3

Query: 370  SIFMESPHQSHLKAAKRILRYIQGTQDYGTFYSTSHSSALVGYTDSDWAGDIEKRKSTSG 191
            S +ME P  +H KAAKRILRYI+GT ++G  YST+    LVGY+DSDW GD++ RKSTSG
Sbjct: 1119 SRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSG 1178

Query: 190  YAFHMGSGVFSRSSKKQQ--XXXXXXXXXXXXXXXXXXAVWL*RMFEELKQKQEISTKIV 17
            + F++G   F+  SKKQ                     A+WL  + +EL   QE  TKI 
Sbjct: 1179 FVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIF 1238

Query: 16   CDNKS 2
             DNKS
Sbjct: 1239 VDNKS 1243