BLASTX nr result
ID: Coptis24_contig00034872
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00034872 (241 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi... 107 1e-21 emb|CBI30973.3| unnamed protein product [Vitis vinifera] 107 1e-21 ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi... 97 1e-18 ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2... 97 1e-18 ref|XP_002521729.1| pentatricopeptide repeat-containing protein,... 94 1e-17 >ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera] Length = 686 Score = 107 bits (266), Expect = 1e-21 Identities = 45/77 (58%), Positives = 61/77 (79%) Frame = +3 Query: 3 ISEFCNQGKINNALKLIEEMVGKGCKPQVGSYSPLIDTLCKRGDFQRAAGLLSTMAEKGI 182 IS FC QGK+ +ALKL+E+MVG+GC P +GSYSP++D LC +GDFQ+A L M EK I Sbjct: 586 ISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDI 645 Query: 183 IPDLFTWHTILVCLTQQ 233 +PD TW+++L+CLTQ+ Sbjct: 646 LPDYSTWNSMLLCLTQE 662 >emb|CBI30973.3| unnamed protein product [Vitis vinifera] Length = 722 Score = 107 bits (266), Expect = 1e-21 Identities = 45/77 (58%), Positives = 61/77 (79%) Frame = +3 Query: 3 ISEFCNQGKINNALKLIEEMVGKGCKPQVGSYSPLIDTLCKRGDFQRAAGLLSTMAEKGI 182 IS FC QGK+ +ALKL+E+MVG+GC P +GSYSP++D LC +GDFQ+A L M EK I Sbjct: 434 ISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDI 493 Query: 183 IPDLFTWHTILVCLTQQ 233 +PD TW+++L+CLTQ+ Sbjct: 494 LPDYSTWNSMLLCLTQE 510 >ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Glycine max] Length = 618 Score = 97.1 bits (240), Expect = 1e-18 Identities = 39/79 (49%), Positives = 59/79 (74%) Frame = +3 Query: 3 ISEFCNQGKINNALKLIEEMVGKGCKPQVGSYSPLIDTLCKRGDFQRAAGLLSTMAEKGI 182 I+ FC QGK+ +ALKL+E++ +GC P +YSPLID LC+ GD Q+A + M +KGI Sbjct: 528 ITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGI 587 Query: 183 IPDLFTWHTILVCLTQQKH 239 +PDLF W+++L+ L+Q++H Sbjct: 588 LPDLFIWNSLLLSLSQERH 606 >ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa] Length = 584 Score = 97.1 bits (240), Expect = 1e-18 Identities = 44/77 (57%), Positives = 55/77 (71%) Frame = +3 Query: 3 ISEFCNQGKINNALKLIEEMVGKGCKPQVGSYSPLIDTLCKRGDFQRAAGLLSTMAEKGI 182 IS FC GK +ALKL+E+MVG+GC P GSYSPLID LC++ FQ+AA LL M E GI Sbjct: 507 ISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGI 566 Query: 183 IPDLFTWHTILVCLTQQ 233 PD W+++ CL+QQ Sbjct: 567 TPDYLIWNSLFHCLSQQ 583 >ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 629 Score = 94.0 bits (232), Expect = 1e-17 Identities = 40/77 (51%), Positives = 59/77 (76%) Frame = +3 Query: 3 ISEFCNQGKINNALKLIEEMVGKGCKPQVGSYSPLIDTLCKRGDFQRAAGLLSTMAEKGI 182 I FC QGK +ALKL+++MVG+GC P G+YSPLID LC++G+FQ+A + + M EKGI Sbjct: 531 IHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIEKGI 590 Query: 183 IPDLFTWHTILVCLTQQ 233 PD TW+++L+ L+++ Sbjct: 591 TPDSSTWNSLLIRLSKE 607