BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034749
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
emb|CBI16710.3| unnamed protein product [Vitis vinifera]              116   2e-24
ref|XP_003556653.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_002526491.1| pentatricopeptide repeat-containing protein,...   112   4e-23
ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [...   110   1e-22

>ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  116 bits (291), Expect = 2e-24
 Identities = 51/80 (63%), Positives = 66/80 (82%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           GC+P  VTF+T+INA CKEGNVV A+KLF  ++++G  PN +MYNTL++G+VK +EI QA
Sbjct: 331 GCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 390

Query: 60  NCLYEEMREKGVTPDVITFN 1
           N LYEEMR+KG+ PD ITFN
Sbjct: 391 NMLYEEMRKKGIAPDGITFN 410



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  P+  T + II  LCK+G + +A  +F D+   G+ P+ + YNTLI+G+ KA ++  A
Sbjct: 646 GLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNA 705

Query: 60  NCLYEEMREKGVTPDVITFN 1
           + L   M   G  PD+ T+N
Sbjct: 706 DNLVNRMYASGSNPDLTTYN 725



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           + G  P+ V FS  I+ L K+G V  A  +F ++   G+ PN   YN+LI GF K  +++
Sbjct: 574 RRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLN 633

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           +A  L + MR +G+ PD+ T N
Sbjct: 634 EALKLEKVMRHRGLLPDIFTTN 655



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/82 (30%), Positives = 48/82 (58%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           ++G SP+ +T++T+IN  CK  ++V A  L   +   G  P+   YN  I GF  ++ ++
Sbjct: 679 QTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMN 738

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           +A  + +E+   G+ P+ +T+N
Sbjct: 739 RAVLMLDELVSAGIVPNTVTYN 760


>emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  116 bits (291), Expect = 2e-24
 Identities = 51/80 (63%), Positives = 66/80 (82%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           GC+P  VTF+T+INA CKEGNVV A+KLF  ++++G  PN +MYNTL++G+VK +EI QA
Sbjct: 121 GCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 180

Query: 60  NCLYEEMREKGVTPDVITFN 1
           N LYEEMR+KG+ PD ITFN
Sbjct: 181 NMLYEEMRKKGIAPDGITFN 200



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 47/80 (58%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  P+  T + II  LCK+G + +A  +F D+   G+ P+ + YNTLI+G+ KA ++  A
Sbjct: 436 GLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNA 495

Query: 60  NCLYEEMREKGVTPDVITFN 1
           + L   M   G  PD+ T+N
Sbjct: 496 DNLVNRMYASGSNPDLTTYN 515



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           + G  P+ V FS  I+ L K+G V  A  +F ++   G+ PN   YN+LI GF K  +++
Sbjct: 364 RRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLN 423

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           +A  L + MR +G+ PD+ T N
Sbjct: 424 EALKLEKVMRHRGLLPDIFTTN 445


>ref|XP_003556653.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  114 bits (286), Expect = 6e-24
 Identities = 51/82 (62%), Positives = 67/82 (81%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           +SG  P++ TF+TI++ALC+EGNVV A+KLF  I+DVGI PN  MYNTL+DG+ K +E+ 
Sbjct: 293 RSGVEPSAATFTTILHALCREGNVVEAQKLFDGIQDVGIAPNAAMYNTLMDGYFKVREVG 352

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           QA+ LYEEMR KGV+PD +TFN
Sbjct: 353 QASLLYEEMRRKGVSPDCVTFN 374


>ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534166|gb|EEF35882.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 884

 Score =  112 bits (279), Expect = 4e-23
 Identities = 49/82 (59%), Positives = 64/82 (78%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           K+GC P+ +TFSTII A C EGNVV A+K+F  I++VG+ PN  MYNTL+ G+ KA+++ 
Sbjct: 341 KNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVC 400

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           QAN LYEEMR+KG+ PD  TFN
Sbjct: 401 QANMLYEEMRDKGIAPDGATFN 422



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           + G  P+  T + IIN  CKEG + +A   F ++  +G+ P+TV YNTLI G+ K  ++ 
Sbjct: 656 QKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMV 715

Query: 66  QANCLYEEMREKGVTPDVITFN 1
            A+    +M   G  PD+ T+N
Sbjct: 716 SADEFLNKMYASGWDPDITTYN 737



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/80 (37%), Positives = 45/80 (56%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  P+++ FS  I+ L K G V  A + F ++   G  PN  +YN+LI G     ++ +A
Sbjct: 588 GICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEA 647

Query: 60  NCLYEEMREKGVTPDVITFN 1
             L  EMR+KG+ PD+ T N
Sbjct: 648 LKLEREMRQKGLLPDIFTTN 667



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           K G  PN+  ++++I+ LC  G +  A KL  ++R  G+ P+    N +I+GF K   + 
Sbjct: 621 KKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMK 680

Query: 66  QANCLYEEMREKGVTPDVITFN 1
            A   + EM   GVTPD +T+N
Sbjct: 681 SAFDAFAEMHHIGVTPDTVTYN 702



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 26/80 (32%), Positives = 48/80 (60%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G +P++VT++T+I   CK  ++V+A +    +   G  P+   YN  I GF  +++IS+A
Sbjct: 693 GVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRA 752

Query: 60  NCLYEEMREKGVTPDVITFN 1
             + +E+   GV P+ +T+N
Sbjct: 753 VTMLDELIAVGVVPNTVTYN 772



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/80 (33%), Positives = 46/80 (57%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  P+S T S+++  L K+G +  A+ L   + D G+  N V +  L+DG+ K  + + A
Sbjct: 518 GLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGA 577

Query: 60  NCLYEEMREKGVTPDVITFN 1
           + L+ EM  +G+ PD I F+
Sbjct: 578 HSLWYEMEARGICPDAIAFS 597


>ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  110 bits (275), Expect = 1e-22
 Identities = 49/82 (59%), Positives = 67/82 (81%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           +SG  P+  TF+TI++ALC+EGNVV A+KLF  I+D+GI PN  +YNTL+DG+ KA+E++
Sbjct: 310 RSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVA 369

Query: 66  QANCLYEEMREKGVTPDVITFN 1
           QA+ LYEEMR  GV+PD +TFN
Sbjct: 370 QASLLYEEMRTTGVSPDCVTFN 391



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/80 (38%), Positives = 48/80 (60%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  P++V F+ +I+ L K GNV  A ++F ++  +G  PN   YN+LI G      +++A
Sbjct: 557 GIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEA 616

Query: 60  NCLYEEMREKGVTPDVITFN 1
             L +EMR+KG+  D  TFN
Sbjct: 617 LKLEKEMRQKGLLSDTFTFN 636



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/81 (32%), Positives = 48/81 (59%)
 Frame = -1

Query: 246 KSGCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEIS 67
           + G +P+S T ++++  LC++G +  A+ L   + + G   N V Y  L+DG+ K   + 
Sbjct: 485 RCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLE 544

Query: 66  QANCLYEEMREKGVTPDVITF 4
            A  L++EM+E+G+ PD + F
Sbjct: 545 GAQFLWKEMKERGIYPDAVAF 565



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/80 (33%), Positives = 46/80 (57%)
 Frame = -1

Query: 240 GCSPNSVTFSTIINALCKEGNVVTAKKLFCDIRDVGIGPNTVMYNTLIDGFVKAKEISQA 61
           G  PN+  ++++I  LC  G V  A KL  ++R  G+  +T  +N +IDGF +  ++  A
Sbjct: 592 GFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFA 651

Query: 60  NCLYEEMREKGVTPDVITFN 1
              + +M+  G+ PD+ TFN
Sbjct: 652 IETFLDMQRIGLLPDIFTFN 671