BLASTX nr result
ID: Coptis24_contig00034732
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00034732
(435 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG37668.1| gag protein [Populus trichocarpa] 131 1e-35
gb|ABG37657.1| integrase [Populus trichocarpa] 131 1e-35
gb|ABG37658.1| integrase [Populus trichocarpa] 132 2e-35
gb|ACY01934.1| hypothetical protein [Beta vulgaris] 130 1e-34
dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis t... 124 2e-34
>gb|ABG37668.1| gag protein [Populus trichocarpa]
Length = 1886
Score = 131 bits (329), Expect(2) = 1e-35
Identities = 63/107 (58%), Positives = 79/107 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL+N KVL RC+EK L +LNW KCHFMVT GIVLGHIVS I +DK++I+ I +LP P
Sbjct: 1256 CLTNLEKVLNRCEEKNL-ILNWKKCHFMVTNGIVLGHIVSSKRIEVDKSKIELIANLPTP 1314
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGCK 322
++ D+R+ LGH GFYRRFIKDFS I KPL LL K ++F + C+
Sbjct: 1315 KSVKDVRSFLGHAGFYRRFIKDFSVISKPLCNLLTKENVFEWTEQCE 1361
Score = 131 bits (329), Expect(2) = 1e-35
Identities = 63/107 (58%), Positives = 79/107 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL+N KVL RC+EK L +LNW KCHFMVT GIVLGHIVS I +DK++I+ I +LP P
Sbjct: 1492 CLTNLEKVLNRCEEKNL-ILNWKKCHFMVTNGIVLGHIVSSKRIEVDKSKIELIANLPTP 1550
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGCK 322
++ D+R+ LGH GFYRRFIKDFS I KPL LL K ++F + C+
Sbjct: 1551 KSVKDVRSFLGHAGFYRRFIKDFSVISKPLCNLLTKENVFEWTEQCE 1597
Score = 43.5 bits (101), Expect(2) = 1e-35
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQPL-LHLRTEVMCDATDYVVGAV 435
+F LK LTSAP++QP L E+MCDA+DYVVGAV
Sbjct: 1363 AFVKLKSLLTSAPVIQPPDWSLPFEIMCDASDYVVGAV 1400
Score = 43.5 bits (101), Expect(2) = 1e-35
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQPL-LHLRTEVMCDATDYVVGAV 435
+F LK LTSAP++QP L E+MCDA+DYVVGAV
Sbjct: 1599 AFVKLKSLLTSAPVIQPPDWSLPFEIMCDASDYVVGAV 1636
>gb|ABG37657.1| integrase [Populus trichocarpa]
Length = 1738
Score = 131 bits (329), Expect(2) = 1e-35
Identities = 63/107 (58%), Positives = 79/107 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL+N KVL RC+EK L +LNW KCHFMVT GIVLGHIVS I +DK++I+ I +LP P
Sbjct: 1108 CLTNLEKVLNRCEEKNL-ILNWKKCHFMVTNGIVLGHIVSSKRIEVDKSKIELIANLPTP 1166
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGCK 322
++ D+R+ LGH GFYRRFIKDFS I KPL LL K ++F + C+
Sbjct: 1167 KSVKDVRSFLGHAGFYRRFIKDFSVISKPLCNLLTKENVFEWTEQCE 1213
Score = 131 bits (329), Expect(2) = 1e-35
Identities = 63/107 (58%), Positives = 79/107 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL+N KVL RC+EK L +LNW KCHFMVT GIVLGHIVS I +DK++I+ I +LP P
Sbjct: 1344 CLTNLEKVLNRCEEKNL-ILNWKKCHFMVTNGIVLGHIVSSKRIEVDKSKIELIANLPTP 1402
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGCK 322
++ D+R+ LGH GFYRRFIKDFS I KPL LL K ++F + C+
Sbjct: 1403 KSVKDVRSFLGHAGFYRRFIKDFSVISKPLCNLLTKENVFEWTEQCE 1449
Score = 43.5 bits (101), Expect(2) = 1e-35
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQPL-LHLRTEVMCDATDYVVGAV 435
+F LK LTSAP++QP L E+MCDA+DYVVGAV
Sbjct: 1215 AFVKLKSLLTSAPVIQPPDWSLPFEIMCDASDYVVGAV 1252
Score = 43.5 bits (101), Expect(2) = 1e-35
Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQPL-LHLRTEVMCDATDYVVGAV 435
+F LK LTSAP++QP L E+MCDA+DYVVGAV
Sbjct: 1451 AFVKLKSLLTSAPVIQPPDWSLPFEIMCDASDYVVGAV 1488
>gb|ABG37658.1| integrase [Populus trichocarpa]
Length = 1139
Score = 132 bits (331), Expect(2) = 2e-35
Identities = 65/107 (60%), Positives = 80/107 (74%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL+N KVL RC+EK L VLNW KCHFMVT GIVLGHIVS I +DK++I+ I +LP P
Sbjct: 511 CLTNLEKVLSRCEEKNL-VLNWEKCHFMVTNGIVLGHIVSSKGIEVDKSKIELIANLPTP 569
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGCK 322
++ D+R+ LGH GFYRRFIKDFS I KPL+ LL K +IF + C+
Sbjct: 570 KSVKDVRSFLGHAGFYRRFIKDFSVISKPLSNLLTKDNIFEWTEHCE 616
Score = 42.4 bits (98), Expect(2) = 2e-35
Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQPL-LHLRTEVMCDATDYVVGAV 435
+F LK+ LTSAP++QP L E+MCDA+DY VGAV
Sbjct: 618 AFVKLKNLLTSAPVVQPPDWSLPFEIMCDASDYAVGAV 655
>gb|ACY01934.1| hypothetical protein [Beta vulgaris]
Length = 1717
Score = 130 bits (326), Expect(2) = 1e-34
Identities = 65/106 (61%), Positives = 78/106 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL N KVLKRC++ + LVLNW KCHFMVT+G+VLGHI+S+ I +DKA+I I LP P
Sbjct: 1059 CLLNLTKVLKRCED-VHLVLNWEKCHFMVTEGVVLGHIISERGIQVDKAKIQVIEQLPPP 1117
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGC 319
+R LGH GFYRRFIKDFSKI KPLT+LLLK + F F + C
Sbjct: 1118 VNVKGVRGFLGHAGFYRRFIKDFSKIAKPLTQLLLKDAPFLFTNEC 1163
Score = 41.6 bits (96), Expect(2) = 1e-34
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +1
Query: 322 ISFDTLKDALTSAPIMQ-PLLHLRTEVMCDATDYVVGAV 435
+SF+ +K AL +API++ P L E+MCDA+DY VGAV
Sbjct: 1165 VSFNRIKQALITAPIIRSPDWTLPFEIMCDASDYAVGAV 1203
>dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 897
Score = 124 bits (312), Expect(2) = 2e-34
Identities = 61/106 (57%), Positives = 78/106 (73%)
Frame = +2
Query: 2 CLSNFFKVLKRCQEKILLVLNWGKCHFMVTKGIVLGHIVSKNEI*LDKAQIDKIMSLPIP 181
CL N +VL RC+E L VLNW KCHFMV +GIVLGH +S+ I +DK +++ +M L P
Sbjct: 226 CLLNLGRVLTRCEETNL-VLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPP 284
Query: 182 RTAHDIRALLGHVGFYRRFIKDFSKIVKPLTKLLLK*SIFNFNHGC 319
+T +IR+ LGH GFYRRFIKDFSKIV+PLT+LL K + F F+ C
Sbjct: 285 KTVKEIRSFLGHAGFYRRFIKDFSKIVRPLTRLLCKETEFEFDEDC 330
Score = 46.2 bits (108), Expect(2) = 2e-34
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 SFDTLKDALTSAPIMQ-PLLHLRTEVMCDATDYVVGAV 435
SF T+KDAL SAP+++ P E+MCDA+DYVVGAV
Sbjct: 333 SFQTIKDALVSAPVVRAPNWDYPFEIMCDASDYVVGAV 370