BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034700
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containi...   228   5e-58
emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]   226   2e-57
ref|XP_002510967.1| pentatricopeptide repeat-containing protein,...   224   4e-57
ref|XP_003617308.1| Auxin response factor [Medicago truncatula] ...   216   2e-54
ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containi...   215   3e-54

>ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  228 bits (580), Expect = 5e-58
 Identities = 103/141 (73%), Positives = 124/141 (87%)
 Frame = +1

Query: 7   AT*LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVM 186
           AT LL++M+ V+ C PTF+SYNVVL++L+ GNCP++ PN+FYEML  GISPT+YTF +VM
Sbjct: 183 ATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVM 242

Query: 187 KALCSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCV 366
           KALC VNE+DSACALLK MTRHGCVPN+IVYQTLIHALSK GRV+E LKLLEEM LM C+
Sbjct: 243 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCI 302

Query: 367 PDVDTFNDILHGLCRLDRIHE 429
           PDV+TFND +HGLC++ RIHE
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHE 323



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 43/121 (35%), Positives = 66/121 (54%)
 Frame = +1

Query: 67  YNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKMT 246
           YN ++  L +    + A N+F +M   G  P I+TF+ ++  LC VN+ + A  L + M 
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539

Query: 247 RHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRIH 426
             G + N+I Y TLIHA  + G + EALKL+ +M    C  D  T+N ++  LCR   I 
Sbjct: 540 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 599

Query: 427 E 429
           +
Sbjct: 600 K 600



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/129 (32%), Positives = 68/129 (52%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GCGP   +YN ++  L +      A  L  EM   G  P + T++I++   C    L+ A
Sbjct: 402 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 461

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             +L +M+  G   N++ Y  LI AL K  +V +AL +  +M    C PD+ TFN ++ G
Sbjct: 462 RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 521

Query: 403 LCRLDRIHE 429
           LC++++  E
Sbjct: 522 LCKVNKFEE 530



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/122 (29%), Positives = 61/122 (50%)
 Frame = +1

Query: 64  SYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKM 243
           +YN ++   +     + A  L  +ML  G      T++ ++KALC    ++   AL + M
Sbjct: 549 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 608

Query: 244 TRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRI 423
              G  PN+I    LI+ L + G +  AL+ L +M      PD+ T+N +++GLC+  R 
Sbjct: 609 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 668

Query: 424 HE 429
            E
Sbjct: 669 QE 670



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/123 (28%), Positives = 61/123 (49%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC     +YN +++ L      E    LF +M+  G++P   + +I++  LC    +  A
Sbjct: 577 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 636

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
              L+ M   G  P+ + Y +LI+ L K GR  EAL L +++ +    PD  T+N ++  
Sbjct: 637 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 696

Query: 403 LCR 411
            C+
Sbjct: 697 HCK 699



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/137 (24%), Positives = 66/137 (48%)
 Frame = +1

Query: 19  LVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALC 198
           L+    + GC P   +Y ++++   +    E A N+  EM   G++     ++ ++ ALC
Sbjct: 429 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 488

Query: 199 SVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVD 378
              ++  A  +   M+  GC P+   + +LI  L K  + +EAL L ++M L   + +  
Sbjct: 489 KDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTI 548

Query: 379 TFNDILHGLCRLDRIHE 429
           T+N ++H   R   + E
Sbjct: 549 TYNTLIHAFLRRGAMQE 565



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P    Y  ++  L +         L  EML  G  P + TF+  +  LC +  +  A
Sbjct: 265 GCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEA 324

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLL--------------------- 339
             L+ +M   G  PNS  Y  L+H L + G+VDEA  LL                     
Sbjct: 325 AKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSR 384

Query: 340 -----------EEMFLMSCVPDVDTFNDILHGLCR 411
                      E M  + C PD+ T+N ++ GLC+
Sbjct: 385 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 419


>emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  226 bits (575), Expect = 2e-57
 Identities = 102/141 (72%), Positives = 123/141 (87%)
 Frame = +1

Query: 7   AT*LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVM 186
           AT LL++M+ V+ C PTF+SYNVVL++L+ GNCP++ PN+FYEML  GISPT+YTF +VM
Sbjct: 165 ATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVM 224

Query: 187 KALCSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCV 366
           KALC VNE+DSACALLK MTRHGCVPN+IVYQTLIHAL K GRV+E LKLLEEM LM C+
Sbjct: 225 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCI 284

Query: 367 PDVDTFNDILHGLCRLDRIHE 429
           PDV+TFND +HGLC++ RIHE
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHE 305



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 43/121 (35%), Positives = 66/121 (54%)
 Frame = +1

Query: 67  YNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKMT 246
           YN ++  L +    + A N+F +M   G  P I+TF+ ++  LC VN+ + A  L + M 
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521

Query: 247 RHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRIH 426
             G + N+I Y TLIHA  + G + EALKL+ +M    C  D  T+N ++  LCR   I 
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 581

Query: 427 E 429
           +
Sbjct: 582 K 582



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/129 (32%), Positives = 68/129 (52%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GCGP   +YN ++  L +      A  L  EM   G  P + T++I++   C    L+ A
Sbjct: 384 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 443

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             +L +M+  G   N++ Y  LI AL K  +V +AL +  +M    C PD+ TFN ++ G
Sbjct: 444 RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 503

Query: 403 LCRLDRIHE 429
           LC++++  E
Sbjct: 504 LCKVNKFEE 512



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/122 (29%), Positives = 61/122 (50%)
 Frame = +1

Query: 64  SYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKM 243
           +YN ++   +     + A  L  +ML  G      T++ ++KALC    ++   AL + M
Sbjct: 531 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 590

Query: 244 TRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRI 423
              G  PN+I    LI+ L + G +  AL+ L +M      PD+ T+N +++GLC+  R 
Sbjct: 591 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRA 650

Query: 424 HE 429
            E
Sbjct: 651 QE 652



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/123 (28%), Positives = 61/123 (49%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC     +YN +++ L      E    LF +M+  G++P   + +I++  LC    +  A
Sbjct: 559 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 618

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
              L+ M   G  P+ + Y +LI+ L K GR  EAL L +++ +    PD  T+N ++  
Sbjct: 619 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 678

Query: 403 LCR 411
            C+
Sbjct: 679 HCK 681



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P    Y  ++  L +         L  EML  G  P + TF+  +  LC +  +  A
Sbjct: 247 GCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEA 306

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLL--------------------- 339
             L+ +M   G  PNS  Y  L+H L + G+VDEA  LL                     
Sbjct: 307 AKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSR 366

Query: 340 -----------EEMFLMSCVPDVDTFNDILHGLCR 411
                      E M  + C PD+ T+N ++ GLC+
Sbjct: 367 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 401



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/137 (24%), Positives = 66/137 (48%)
 Frame = +1

Query: 19  LVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALC 198
           L+    + GC P   +Y ++++   +    E A N+  EM   G++     ++ ++ ALC
Sbjct: 411 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 470

Query: 199 SVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVD 378
              ++  A  +   M+  GC P+   + +LI  L K  + +EAL L ++M L   + +  
Sbjct: 471 KDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTI 530

Query: 379 TFNDILHGLCRLDRIHE 429
           T+N ++H   R   + E
Sbjct: 531 TYNTLIHAFLRRGAMQE 547


>ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550082|gb|EEF51569.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 774

 Score =  224 bits (572), Expect = 4e-57
 Identities = 102/141 (72%), Positives = 124/141 (87%)
 Frame = +1

Query: 7   AT*LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVM 186
           AT +L++MK V+ C PTFKSYNVVL+ILV  NCP +A N+FYEML  G+ PT+YTF +VM
Sbjct: 156 ATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVM 215

Query: 187 KALCSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCV 366
           KALC VNE+D+AC+LL+ MT+HGCVPNS+VYQTLIHALSK  RV+EALKLLEEMFLM C+
Sbjct: 216 KALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCL 275

Query: 367 PDVDTFNDILHGLCRLDRIHE 429
           PDVDTFND+++GLCRL+RIHE
Sbjct: 276 PDVDTFNDVIYGLCRLNRIHE 296



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/126 (33%), Positives = 71/126 (56%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P   ++N ++  L +      A ++  +M  NG +P + T++ ++   C  N+L+ A
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEA 434

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             +L +M+  G   N + Y  L+ AL K G+V +AL +L EM    C PD+ TFN ++ G
Sbjct: 435 GYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG 494

Query: 403 LCRLDR 420
           LC++DR
Sbjct: 495 LCKVDR 500



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/116 (35%), Positives = 63/116 (54%)
 Frame = +1

Query: 67  YNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKMT 246
           YNV+L  L +      A ++  EM   G  P I+TF+ ++  LC V+  + A AL + M 
Sbjct: 453 YNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512

Query: 247 RHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRL 414
             G + N++ Y TLIHA  + G + EALKL+ +M    C  D  T+N ++   C+L
Sbjct: 513 LDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKL 568



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/122 (31%), Positives = 65/122 (53%)
 Frame = +1

Query: 64  SYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKM 243
           +YN ++   + G   + A  L  +ML  G      T++ ++KA C +   + A  L  +M
Sbjct: 522 TYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM 581

Query: 244 TRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRI 423
            R   VP++I    LI+ L + G+V  AL+LL +M      PDV T+N +++GLC++  I
Sbjct: 582 VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641

Query: 424 HE 429
            E
Sbjct: 642 RE 643



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/129 (29%), Positives = 64/129 (49%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P   +Y  +L+   + N  E A  +  EM   G    I  ++++++ALC   ++  A
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             +L +M+  GC P+   + TLI  L K  R ++AL L  +M L   + +  T+N ++H 
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHA 529

Query: 403 LCRLDRIHE 429
             R   I E
Sbjct: 530 FLRGGAIQE 538



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P    Y  ++  L + +    A  L  EM   G  P + TF+ V+  LC +N +   
Sbjct: 238 GCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEG 297

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLL--------------------- 339
             L+ +M   G  PN I Y  L++ L + G+VDEA  LL                     
Sbjct: 298 AKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKS 357

Query: 340 -----------EEMFLMSCVPDVDTFNDILHGLCR 411
                      ++M    C PDV TFN ++HGLC+
Sbjct: 358 GRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCK 392



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
 Frame = +1

Query: 19  LVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALC 198
           L+E   + GC P   ++N V+  L   N       L   ML  G +P   T+ ++M  LC
Sbjct: 265 LLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLC 324

Query: 199 SVNELDSACALLKK--------------------------------MTRHGCVPNSIVYQ 282
            V ++D A  LL K                                M ++GC P+   + 
Sbjct: 325 RVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFN 384

Query: 283 TLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRIHE 429
           TLIH L K G +  A+ ++ +M    C P++ T+  +L G C+ +++ E
Sbjct: 385 TLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEE 433



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/123 (28%), Positives = 63/123 (51%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC     +YN +++   +    E A  LF EM++  + P+  + ++++  LC V ++ +A
Sbjct: 550 GCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNA 609

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             LL+ M   G  P+ + Y +LI+ L K G + EA  L  ++      PD  T+N ++  
Sbjct: 610 LELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICW 669

Query: 403 LCR 411
            CR
Sbjct: 670 HCR 672


>ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
           gi|355518643|gb|AET00267.1| Auxin response factor
           [Medicago truncatula]
          Length = 948

 Score =  216 bits (550), Expect = 2e-54
 Identities = 100/141 (70%), Positives = 120/141 (85%)
 Frame = +1

Query: 7   AT*LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVM 186
           AT LL++M  V+   PTFKSYNVVLEILV GNCP++APN+FY+ML  GISPT+YTF +VM
Sbjct: 148 ATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVM 207

Query: 187 KALCSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCV 366
           KA C VNE+DSAC+LL+ MT+HGCVPNSI+YQ LIHALS+  RV+EA+KLLEEMFLM C 
Sbjct: 208 KAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCE 267

Query: 367 PDVDTFNDILHGLCRLDRIHE 429
           PDV TFND++HGLC+  RIHE
Sbjct: 268 PDVQTFNDVIHGLCKAGRIHE 288



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 41/138 (29%), Positives = 74/138 (53%)
 Frame = +1

Query: 16  LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKAL 195
           LL +   + G  P   ++N++++ L +      A     EM+K G  P + T++I++   
Sbjct: 358 LLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGF 417

Query: 196 CSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDV 375
           C     + A  ++  M+  G   N++ Y  LI AL K G++ +AL++  EM    C PD+
Sbjct: 418 CKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDI 477

Query: 376 DTFNDILHGLCRLDRIHE 429
            TFN +++GLC+ D++ E
Sbjct: 478 YTFNSLIYGLCKNDKMEE 495



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 36/115 (31%), Positives = 61/115 (53%)
 Frame = +1

Query: 67  YNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKMT 246
           YN ++  L +    + A  ++ EM   G  P IYTF+ ++  LC  ++++ A  L + M 
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDML 504

Query: 247 RHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCR 411
             G + N++ Y TLIHA  +   + +A KL+ EM    C  D  T+N ++  LC+
Sbjct: 505 LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCK 559



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 35/129 (27%), Positives = 68/129 (52%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P   ++N ++  L + +  E A  L+ +ML  G+     T++ ++ A   +  +  A
Sbjct: 472 GCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQA 531

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             L+ +M   GC  ++I Y  LI AL K G  ++ L L+E+MF     P +++ N +++ 
Sbjct: 532 DKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINS 591

Query: 403 LCRLDRIHE 429
            CR  ++++
Sbjct: 592 FCRTGKVND 600



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 59/122 (48%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC     +YN +++ L +    E    L  +M    I P+I + +I++ + C   +++ A
Sbjct: 542 GCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDA 601

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
              L+ M + G  P+ + Y +LI+ L K GR  EAL L   +      PD  T+N ++  
Sbjct: 602 LQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISR 661

Query: 403 LC 408
            C
Sbjct: 662 YC 663



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
 Frame = +1

Query: 58  FKSYNVVLEILVEGNCP----EIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSAC 225
           F+   +   IL++G C     E A  +   M   G+S     ++ ++ ALC   ++  A 
Sbjct: 403 FEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDAL 462

Query: 226 ALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGL 405
            +  +M+  GC P+   + +LI+ L K  +++EAL L  +M L   + +  T+N ++H  
Sbjct: 463 QMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAF 522

Query: 406 CRLDRIHE 429
            RL+ I +
Sbjct: 523 LRLELIQQ 530


>ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  215 bits (548), Expect = 3e-54
 Identities = 96/141 (68%), Positives = 120/141 (85%)
 Frame = +1

Query: 7   AT*LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVM 186
           AT LL++M  V+ C PTFKSYNVVL+ILV+G+CP +APN+FY+ML  G+SPT+YTF +VM
Sbjct: 153 ATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVM 212

Query: 187 KALCSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCV 366
           KALC V+E+DSAC+LL+ M +HGCVPNS++YQTLIHAL +  RV EAL+LLE+MFLM C 
Sbjct: 213 KALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCE 272

Query: 367 PDVDTFNDILHGLCRLDRIHE 429
           PDV TFND++HGLCR  RIHE
Sbjct: 273 PDVQTFNDVIHGLCRAGRIHE 293



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 43/138 (31%), Positives = 73/138 (52%)
 Frame = +1

Query: 16  LLVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKAL 195
           LL     + G  P   ++N++++ LV+      A  L  EM+     P + T++I++   
Sbjct: 363 LLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGF 422

Query: 196 CSVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDV 375
           C    L+ A  ++  M+  G   N++ Y  LI AL K G ++EAL+L  EM    C PD+
Sbjct: 423 CKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDI 482

Query: 376 DTFNDILHGLCRLDRIHE 429
            TFN +++GLC+  ++ E
Sbjct: 483 YTFNSLINGLCKNHKMEE 500



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/121 (31%), Positives = 63/121 (52%)
 Frame = +1

Query: 67  YNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKMT 246
           YN ++  L +    E A  LF EM   G  P IYTF+ ++  LC  ++++ A +L   M 
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509

Query: 247 RHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRIH 426
             G + N++ Y TL+HA      + +A KL++EM    C  D  T+N ++  LC+   + 
Sbjct: 510 LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569

Query: 427 E 429
           +
Sbjct: 570 K 570



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/129 (28%), Positives = 68/129 (52%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P   ++N ++  L + +  E A +L+++M   G+     T++ ++ A    + +  A
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
             L+ +M   GC  ++I Y  LI AL K G V++ L L EEM      P + + N ++ G
Sbjct: 537 FKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISG 596

Query: 403 LCRLDRIHE 429
           LCR  ++++
Sbjct: 597 LCRTGKVND 605



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 39/122 (31%), Positives = 61/122 (50%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC     +YN +++ L +    E    LF EML  GI PTI + +I++  LC   +++ A
Sbjct: 547 GCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDA 606

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHG 402
              L+ M   G  P+ + Y +LI+ L K G V EA  L  ++      PD  T+N ++  
Sbjct: 607 LKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISR 666

Query: 403 LC 408
            C
Sbjct: 667 HC 668



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/122 (29%), Positives = 64/122 (52%)
 Frame = +1

Query: 64  SYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSACALLKKM 243
           +YN ++   +  +  + A  L  EML  G      T++ ++KALC    ++    L ++M
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 244 TRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGLCRLDRI 423
              G  P  I    LI  L + G+V++ALK L++M      PD+ T+N +++GLC++  +
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 424 HE 429
            E
Sbjct: 639 QE 640



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
 Frame = +1

Query: 19  LVEMKDVFGCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALC 198
           L+E   +  C P  +++N V+  L        A  L   ML  G S    T+  +M  LC
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 199 SVNELDSACALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLL-EEMFLMSCVPDV 375
            + ++D A ALL K+      PN+++Y TLI     +GR +EA  LL   M +    PD 
Sbjct: 322 RMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDA 377

Query: 376 DTFNDILHGLCR 411
            TFN ++ GL +
Sbjct: 378 YTFNIMIDGLVK 389



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
 Frame = +1

Query: 58  FKSYNVVLEILVEGNCP----EIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSAC 225
           F+   +   IL+ G C     E A  +   M   G+S     ++ ++ ALC    ++ A 
Sbjct: 408 FEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEAL 467

Query: 226 ALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDTFNDILHGL 405
            L  +M+  GC P+   + +LI+ L K  +++EAL L  +MFL   + +  T+N ++H  
Sbjct: 468 QLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAF 527

Query: 406 CRLDRIHE 429
              D I +
Sbjct: 528 LMRDSIQQ 535



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
 Frame = +1

Query: 43  GCGPTFKSYNVVLEILVEGNCPEIAPNLFYEMLKNGISPTIYTFSIVMKALCSVNELDSA 222
           GC P    Y  ++  L E N    A  L  +M      P + TF+ V+  LC    +  A
Sbjct: 235 GCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEA 294

Query: 223 CALLKKMTRHGCVPNSIVYQTLIHALSKAGRVDEALKLLEEMFLMSCVPDVDT--FNDIL 396
             LL +M   G   +++ Y  L+H L + G+VDEA  LL +      +P+ +T  +N ++
Sbjct: 295 AKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNK------IPNPNTVLYNTLI 348

Query: 397 HGLCRLDRIHE 429
            G     R  E
Sbjct: 349 SGYVASGRFEE 359