BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034682
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
emb|CBI23541.3| unnamed protein product [Vitis vinifera]              185   4e-45
ref|XP_002303374.1| predicted protein [Populus trichocarpa] gi|2...   172   3e-41
ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containi...   171   4e-41
ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containi...   171   4e-41

>ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  185 bits (469), Expect = 4e-45
 Identities = 86/118 (72%), Positives = 104/118 (88%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKSV 185
           WNTMISG SQNG M +A ELF  MP +NSVSW+AMISG+VE+GDLD A  LF+ APV+SV
Sbjct: 102 WNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSV 161

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMV 359
           VAWTAM+TG+MKF KIELAEK FEEMP++NLV+WN MI+GY+ENC+AE+GLKLF++MV
Sbjct: 162 VAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV 219



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = +3

Query: 6   WNTMISGLS-QNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKS 182
           WN+M++G S + G++  A +LF  +PE +  S++ M++ ++   D+++A   F + PVK 
Sbjct: 39  WNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKD 98

Query: 183 VVAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLF 347
             +W  M++G+ +   ++ A ++F  MPVRN VSWN MISGYVE+   +   +LF
Sbjct: 99  TASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLF 153



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
 Frame = +3

Query: 9   NTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVET-GDLDAAVGLFQRAPVKSV 185
           N +I+   ++G+++ A+ +F +M  K +V+W++M++G+    G +  A  LF R P   +
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDI 68

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKM 356
            ++  M+  Y+    +E A   F++MPV++  SWN MISG+ +N   +   +LF  M
Sbjct: 69  FSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 39/156 (25%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAP---- 173
           W  MI+G  + G++  A + F  MP KN V+W+AMI+G++E    +  + LF+R      
Sbjct: 164 WTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGF 223

Query: 174 ------------------------------VKSVVAW-----TAMVTGYMKFRKIELAEK 248
                                          KS V+W     T++++ Y K   +E A K
Sbjct: 224 RPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWK 283

Query: 249 MFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKM 356
           +F  MP +++V+WN MISGY ++   E  L LF KM
Sbjct: 284 LFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKM 319



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = +3

Query: 87  NSVSWSAMISGFVETGDLDAAVGLFQRAPVKSVVAWTAMVTGYMKFR-KIELAEKMFEEM 263
           N +S + +I+  + +GDL++A+ +F+   VK+ V W +M+ GY   R KI++A ++F+ +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 264 PVRNLVSWNCMISGYVENCRAEDGLKLFRKM 356
           P  ++ S+N M++ Y+ N   E     F +M
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQM 94


>emb|CBI23541.3| unnamed protein product [Vitis vinifera]
          Length = 385

 Score =  185 bits (469), Expect = 4e-45
 Identities = 86/118 (72%), Positives = 104/118 (88%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKSV 185
           WNTMISG SQNG M +A ELF  MP +NSVSW+AMISG+VE+GDLD A  LF+ APV+SV
Sbjct: 113 WNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSV 172

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMV 359
           VAWTAM+TG+MKF KIELAEK FEEMP++NLV+WN MI+GY+ENC+AE+GLKLF++MV
Sbjct: 173 VAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV 230



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = +3

Query: 6   WNTMISGLS-QNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKS 182
           WN+M++G S + G++  A +LF  +PE +  S++ M++ ++   D+++A   F + PVK 
Sbjct: 50  WNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKD 109

Query: 183 VVAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLF 347
             +W  M++G+ +   ++ A ++F  MPVRN VSWN MISGYVE+   +   +LF
Sbjct: 110 TASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLF 164



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
 Frame = +3

Query: 15  MISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVET-GDLDAAVGLFQRAPVKSVVA 191
           +I+   ++G+++ A+ +F +M  K +V+W++M++G+    G +  A  LF R P   + +
Sbjct: 22  VITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFS 81

Query: 192 WTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKM 356
           +  M+  Y+    +E A   F++MPV++  SWN MISG+ +N   +   +LF  M
Sbjct: 82  YNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 136


>ref|XP_002303374.1| predicted protein [Populus trichocarpa] gi|222840806|gb|EEE78353.1|
           predicted protein [Populus trichocarpa]
          Length = 569

 Score =  172 bits (436), Expect = 3e-41
 Identities = 79/119 (66%), Positives = 101/119 (84%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKSV 185
           WNTMI+G +QN +M +A +LF  MP KN V+W+AMISG+VE GDLD+A+ LF++AP KSV
Sbjct: 72  WNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSV 131

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMVG 362
           VAWTAM+TGYMK  +I LAE++FE+MP +NLV+WN MI+GY+EN RAEDG+KLFR MVG
Sbjct: 132 VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVG 190



 Score =  101 bits (251), Expect = 7e-20
 Identities = 45/117 (38%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
 Frame = +3

Query: 6   WNTMISGLSQN-GEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKS 182
           WN++++G+S+  G++ EA ELF  +PE ++VS++ M+S +V   +++ A   F+  P+K 
Sbjct: 9   WNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKD 68

Query: 183 VVAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRK 353
             +W  M+TG+ + ++++ A  +F  MP +N+V+WN MISGYVE    +  LKLF K
Sbjct: 69  TPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEK 125



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 39/157 (24%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQ------- 164
           W  MI+G  + G +  A  LF  MPEKN V+W+AMI+G++E    +  V LF+       
Sbjct: 134 WTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGI 193

Query: 165 -------------------------------RAPV-KSVVAWTAMVTGYMKFRKIELAEK 248
                                          ++P+     A T++++ Y K   +E   K
Sbjct: 194 QPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWK 253

Query: 249 MFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMV 359
           +F ++P R++V+WN MISGY ++   +  L LF +M+
Sbjct: 254 LFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290


>ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  171 bits (434), Expect = 4e-41
 Identities = 79/118 (66%), Positives = 100/118 (84%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKSV 185
           WNT+ISG +QNG+M +A +LFS MPEKN VSWSAMISG+VE GDL+AA  L++   +KSV
Sbjct: 170 WNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV 229

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMV 359
           V  TAM+TGYMKF K+ELAE++F+ M V+NLV+WN MI+GYVENCRAEDGLK+F+ M+
Sbjct: 230 VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEK----NSVSWSAMISGFVETGDLDAAVGLFQ--- 164
           WN+MI+G  +N    + +++F TM E     N +S S+++ G      L     + Q   
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 165 RAPV-KSVVAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLK 341
           ++P+ K   A T++++ Y K   ++ A K+F EMP ++++SWN MISGY ++      L 
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALH 382

Query: 342 LFRKM 356
           LF KM
Sbjct: 383 LFDKM 387



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 93  VSWSAMISGFVETGDLDAAVGLFQRAPVKSVVAWTAMVTGYMKFR-KIELAEKMFEEMPV 269
           VS +  I+ FV   DL++A  +F++  V++ V W  M++GY K   K++ A ++F+++P 
Sbjct: 74  VSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE 133

Query: 270 RNLVSWNCMISGYVENCRAEDGLKLFRKM 356
            + VS+N M+  Y+ +   E  L  F KM
Sbjct: 134 PDSVSYNIMLVCYLRSYGVEAALAFFNKM 162


>ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  171 bits (434), Expect = 4e-41
 Identities = 79/118 (66%), Positives = 100/118 (84%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEKNSVSWSAMISGFVETGDLDAAVGLFQRAPVKSV 185
           WNT+ISG +QNG+M +A +LFS MPEKN VSWSAMISG+VE GDL+AA  L++   +KSV
Sbjct: 170 WNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSV 229

Query: 186 VAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLKLFRKMV 359
           V  TAM+TGYMKF K+ELAE++F+ M V+NLV+WN MI+GYVENCRAEDGLK+F+ M+
Sbjct: 230 VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
 Frame = +3

Query: 6   WNTMISGLSQNGEMSEAMELFSTMPEK----NSVSWSAMISGFVETGDLDAAVGLFQ--- 164
           WN+MI+G  +N    + +++F TM E     N +S S+++ G      L     + Q   
Sbjct: 263 WNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVS 322

Query: 165 RAPV-KSVVAWTAMVTGYMKFRKIELAEKMFEEMPVRNLVSWNCMISGYVENCRAEDGLK 341
           ++P+ K   A T++++ Y K   ++ A K+F EMP +++++WN MISGY ++      L 
Sbjct: 323 KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALH 382

Query: 342 LFRKM 356
           LF KM
Sbjct: 383 LFDKM 387



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 93  VSWSAMISGFVETGDLDAAVGLFQRAPVKSVVAWTAMVTGYMKFR-KIELAEKMFEEMPV 269
           VS +  I+ FV   DL++A  +F++  V++ V W  M++GY K   K++ A ++F+++P 
Sbjct: 74  VSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE 133

Query: 270 RNLVSWNCMISGYVENCRAEDGLKLFRKM 356
            + VS+N M+  Y+ +   +  L  F KM
Sbjct: 134 PDSVSYNIMLVCYLRSYGVKAALAFFNKM 162