BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034650
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43831.1|RUBB_SECCE RecName: Full=RuBisCO large subunit-bindi...    48   5e-11
ref|NP_187956.1| TCP-1/cpn60 chaperonin family protein [Arabidop...    48   1e-10
gb|AFI08589.1| cyclophilin, partial [Rhododendron micranthum]          48   1e-10
gb|ABK24483.1| unknown [Picea sitchensis]                              48   1e-10
ref|XP_003557154.1| PREDICTED: chaperonin 60 subunit beta 1, chl...    48   2e-10

>sp|Q43831.1|RUBB_SECCE RecName: Full=RuBisCO large subunit-binding protein subunit beta,
           chloroplastic; AltName: Full=60 kDa chaperonin subunit
           beta; AltName: Full=CPN-60 beta
           gi|1167858|emb|CAA93139.1| chaperonin [Secale cereale]
          Length = 499

 Score = 47.8 bits (112), Expect(2) = 5e-11
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 374 PVENIGAELVRQGGSKTNDLAWNGTITSVV 285
           PVENIGA+LVRQ  +KTNDLA +GT TSVV
Sbjct: 19  PVENIGAKLVRQAAAKTNDLAGDGTTTSVV 48



 Score = 44.3 bits (103), Expect(2) = 5e-11
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = -2

Query: 217 KTIKAFVIKLKFMSTECCVLKTMTSKCG*SSANNNYEGKSLIVDVNE*GGPKGHDNTFKE 38
           KT KA V++LK MS E  V  +  +     SA NNYE  ++I +     G KG   T +E
Sbjct: 76  KTAKALVLELKKMSKE--VEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVV-TLEE 132

Query: 37  GKSSKNNLYIV 5
           G+SS+NNLY+V
Sbjct: 133 GRSSENNLYVV 143


>ref|NP_187956.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]
           gi|75311214|sp|Q9LJE4.1|CPNB2_ARATH RecName:
           Full=Chaperonin 60 subunit beta 2, chloroplastic;
           Short=CPN-60 beta 2; Flags: Precursor
           gi|9280299|dbj|BAB01754.1| GloEL protein; chaperonin, 60
           kDa [Arabidopsis thaliana] gi|332641841|gb|AEE75362.1|
           TCP-1/cpn60 chaperonin family protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 47.8 bits (112), Expect(2) = 1e-10
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 374 PVENIGAELVRQGGSKTNDLAWNGTITSVV 285
           PVENIGA+LVRQ  +KTNDLA +GT TSVV
Sbjct: 116 PVENIGAKLVRQAAAKTNDLAGDGTTTSVV 145



 Score = 43.1 bits (100), Expect(2) = 1e-10
 Identities = 31/71 (43%), Positives = 41/71 (57%)
 Frame = -2

Query: 217 KTIKAFVIKLKFMSTECCVLKTMTSKCG*SSANNNYEGKSLIVDVNE*GGPKGHDNTFKE 38
           KT KA V +LK MS E  V  +  +     SA NN+E  S+I +     G KG   T +E
Sbjct: 173 KTAKALVNELKLMSKE--VEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVV-TLEE 229

Query: 37  GKSSKNNLYIV 5
           GKS++NNLY+V
Sbjct: 230 GKSAENNLYVV 240


>gb|AFI08589.1| cyclophilin, partial [Rhododendron micranthum]
          Length = 211

 Score = 47.8 bits (112), Expect(2) = 1e-10
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 374 PVENIGAELVRQGGSKTNDLAWNGTITSVV 285
           PVENIGA+LVRQ  +KTNDLA +GT TSVV
Sbjct: 85  PVENIGAKLVRQAAAKTNDLAGDGTTTSVV 114



 Score = 43.1 bits (100), Expect(2) = 1e-10
 Identities = 30/71 (42%), Positives = 41/71 (57%)
 Frame = -2

Query: 217 KTIKAFVIKLKFMSTECCVLKTMTSKCG*SSANNNYEGKSLIVDVNE*GGPKGHDNTFKE 38
           KT KA V +LK MS E  V  +  +     SA NNYE  ++I +     G KG   T +E
Sbjct: 142 KTAKALVSELKLMSKE--VEDSELADVAADSAGNNYEVGNMIAEAMRKVGRKGVV-TLEE 198

Query: 37  GKSSKNNLYIV 5
           GKS++N+LY+V
Sbjct: 199 GKSAENSLYVV 209


>gb|ABK24483.1| unknown [Picea sitchensis]
          Length = 617

 Score = 47.8 bits (112), Expect(2) = 1e-10
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 374 PVENIGAELVRQGGSKTNDLAWNGTITSVV 285
           PVENIGA+LVRQ  +KTNDLA +GT TSVV
Sbjct: 137 PVENIGAKLVRQAAAKTNDLAGDGTTTSVV 166



 Score = 42.7 bits (99), Expect(2) = 1e-10
 Identities = 30/71 (42%), Positives = 41/71 (57%)
 Frame = -2

Query: 217 KTIKAFVIKLKFMSTECCVLKTMTSKCG*SSANNNYEGKSLIVDVNE*GGPKGHDNTFKE 38
           KT+KA V +LK  S E  V  +  +     SA NNYE  ++I +     G KG   T +E
Sbjct: 194 KTVKALVSELKSFSKE--VEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVV-TLEE 250

Query: 37  GKSSKNNLYIV 5
           GKS++NNLY+V
Sbjct: 251 GKSAENNLYVV 261


>ref|XP_003557154.1| PREDICTED: chaperonin 60 subunit beta 1, chloroplastic-like
           [Brachypodium distachyon]
          Length = 599

 Score = 47.8 bits (112), Expect(2) = 2e-10
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 374 PVENIGAELVRQGGSKTNDLAWNGTITSVV 285
           PVENIGA+LVRQ  +KTNDLA +GT TSVV
Sbjct: 119 PVENIGAKLVRQAAAKTNDLAGDGTTTSVV 148



 Score = 42.4 bits (98), Expect(2) = 2e-10
 Identities = 31/71 (43%), Positives = 41/71 (57%)
 Frame = -2

Query: 217 KTIKAFVIKLKFMSTECCVLKTMTSKCG*SSANNNYEGKSLIVDVNE*GGPKGHDNTFKE 38
           KT KA V +LK MS E  V  +  +     SA NNYE  ++I +     G KG   T +E
Sbjct: 176 KTAKALVEELKKMSKE--VEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVV-TLEE 232

Query: 37  GKSSKNNLYIV 5
           G+SS+NNLY+V
Sbjct: 233 GRSSENNLYVV 243