BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034633
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   144   6e-33
emb|CBI28530.3| unnamed protein product [Vitis vinifera]              137   7e-31
ref|XP_002514722.1| pentatricopeptide repeat-containing protein,...   125   4e-27
ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|2...   123   1e-26
ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26

>ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61370, mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  144 bits (364), Expect = 6e-33
 Identities = 74/124 (59%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
 Frame = -1

Query: 367 PRKQPLFNFQHLSL--SPDFA*LCNIVSNGIGGLDDLEASLNSSKALITPFLVTQVLDSC 194
           PR+ PL  F  +SL  SP    LCN+VSNG+G LDDLEASL+   A  T  L++Q+LD+C
Sbjct: 21  PRRLPLALFSTMSLGPSPVLQELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTC 80

Query: 193 KNEVPTRRLLRFFSWSNKSPECRFEDGDFNHTIRVFAEKKDLVALDILVSSLRKEQRVME 14
           KNE PTRRLLRFF WS+K   C+ ED DFN+ I+VFAEKKDL A+DILVS L  E R M+
Sbjct: 81  KNEAPTRRLLRFFLWSSKKFNCKLEDDDFNYAIQVFAEKKDLKAIDILVSDLSNEGREMK 140

Query: 13  VETF 2
            +TF
Sbjct: 141 AQTF 144


>emb|CBI28530.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score =  137 bits (346), Expect = 7e-31
 Identities = 68/111 (61%), Positives = 82/111 (73%)
 Frame = -1

Query: 334 LSLSPDFA*LCNIVSNGIGGLDDLEASLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFF 155
           L  SP    LCN+VSNG+G LDDLEASL+   A  T  L++Q+LD+CKNE PTRRLLRFF
Sbjct: 3   LGPSPVLQELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTCKNEAPTRRLLRFF 62

Query: 154 SWSNKSPECRFEDGDFNHTIRVFAEKKDLVALDILVSSLRKEQRVMEVETF 2
            WS+K   C+ ED DFN+ I+VFAEKKDL A+DILVS L  E R M+ +TF
Sbjct: 63  LWSSKKFNCKLEDDDFNYAIQVFAEKKDLKAIDILVSDLSNEGREMKAQTF 113


>ref|XP_002514722.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546326|gb|EEF47828.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 479

 Score =  125 bits (314), Expect = 4e-27
 Identities = 62/102 (60%), Positives = 75/102 (73%)
 Frame = -1

Query: 307 LCNIVSNGIGGLDDLEASLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFFSWSNKSPEC 128
           +C  VS+ IGGLDDLE+SLN  +  +T  +VTQV+D CK+E PTRRLLRFF WS K  + 
Sbjct: 28  ICKAVSSSIGGLDDLESSLNGFRGNLTSQIVTQVIDCCKHEAPTRRLLRFFLWSYKRLDF 87

Query: 127 RFEDGDFNHTIRVFAEKKDLVALDILVSSLRKEQRVMEVETF 2
             +D DFNH IRV AEKKD  A+ IL+S LRKE RVME +TF
Sbjct: 88  SMKDEDFNHAIRVLAEKKDHTAMQILISDLRKEGRVMEPQTF 129


>ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|222859274|gb|EEE96821.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  123 bits (309), Expect = 1e-26
 Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 3/133 (2%)
 Frame = -1

Query: 391 LLTHIIFTPRKQPLFNF--QHLSLSPDFA*LCNIVSNGIGGLDDLEASLNSSKALITPFL 218
           L  +I     K PL++   QH  L  +    C ++S+ IGGLDDLE SLN  K  +T  L
Sbjct: 13  LFQNIKTNKSKPPLYSTKQQHNQLPLELQEACKVISSWIGGLDDLELSLNQFKGQLTYPL 72

Query: 217 VTQVLDSCKNEVPTRRLLRFFSWSNKSPEC-RFEDGDFNHTIRVFAEKKDLVALDILVSS 41
           VTQ+++SCK+E P+RR+LRFF WSNK  +  + +D DFNH IRV AEKKD   + IL+S 
Sbjct: 73  VTQIINSCKHEAPSRRILRFFLWSNKVLDSEKLKDDDFNHVIRVLAEKKDHTGMRILISD 132

Query: 40  LRKEQRVMEVETF 2
           LRKE RVM+ +TF
Sbjct: 133 LRKEGRVMDPQTF 145


>ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Glycine max]
          Length = 451

 Score =  122 bits (305), Expect = 4e-26
 Identities = 61/111 (54%), Positives = 77/111 (69%)
 Frame = -1

Query: 334 LSLSPDFA*LCNIVSNGIGGLDDLEASLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFF 155
           +S+ P    LC+IV + +GGLD+LE SLN  K  +T  LV Q +DS K+E  TRRLLRFF
Sbjct: 1   MSVHPQLQELCSIVMSTVGGLDELELSLNKFKDSLTSSLVAQAIDSSKHEAQTRRLLRFF 60

Query: 154 SWSNKSPECRFEDGDFNHTIRVFAEKKDLVALDILVSSLRKEQRVMEVETF 2
            WS K+   R ED D+NH +RVFAEKKD  A+DIL+  L+KE R M+ ETF
Sbjct: 61  LWSCKNLSHRLEDKDYNHALRVFAEKKDYTAMDILMGDLKKEGRAMDAETF 111