BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034629
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2...   165   4e-39
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,...   163   1e-38
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi...   160   8e-38
ref|XP_002889139.1| pentatricopeptide repeat-containing protein ...   160   8e-38

>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score =  165 bits (417), Expect = 4e-39
 Identities = 77/92 (83%), Positives = 86/92 (93%)
 Frame = +1

Query: 4   VLNVETFCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQE 183
           ++NVETFC+IMRKYARAQ+V+EA+YTFN+M+KY V  NLAAFN LLSA CKSKNVRKAQE
Sbjct: 87  MVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQE 146

Query: 184 IFDSMKDRFVPDSKTYSILLEGWGKSPNLPKA 279
           IFDS+KDRFVPDSKTYSILLEGWGK PNLPKA
Sbjct: 147 IFDSIKDRFVPDSKTYSILLEGWGKDPNLPKA 178


>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 439

 Score =  163 bits (413), Expect = 1e-38
 Identities = 77/92 (83%), Positives = 85/92 (92%)
 Frame = +1

Query: 4   VLNVETFCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQE 183
           +LNVETFC+IMRKYARAQ+++EA+YTFNVMEKY V  NLAAFN L SA CKSKNVRKAQE
Sbjct: 87  MLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQE 146

Query: 184 IFDSMKDRFVPDSKTYSILLEGWGKSPNLPKA 279
           IFDS KDRFVPDSKTY+ILLEGWGK+PNLPKA
Sbjct: 147 IFDSSKDRFVPDSKTYTILLEGWGKTPNLPKA 178


>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
           gi|449499065|ref|XP_004160711.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  162 bits (411), Expect = 2e-38
 Identities = 74/92 (80%), Positives = 87/92 (94%)
 Frame = +1

Query: 4   VLNVETFCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQE 183
           +LNVE FC+IMRKYARAQ+V+EA+YTFNVMEKY ++ N+AAFN LLSA CKSKNVRKAQE
Sbjct: 87  ILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQE 146

Query: 184 IFDSMKDRFVPDSKTYSILLEGWGKSPNLPKA 279
           IFD+MKD+FVPDSKTYSIL+EGWG++PNLPKA
Sbjct: 147 IFDNMKDQFVPDSKTYSILIEGWGRAPNLPKA 178



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +1

Query: 22  FCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQEIFDSMK 201
           + V++  Y    R+++A+ TF  ME+ GV  ++AA+N+L+SAFCK+  ++    +   M 
Sbjct: 232 YSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMD 291

Query: 202 DRFV-PDSKTYSILL 243
            + V P+S+T +I++
Sbjct: 292 LKGVNPNSRTCNIII 306


>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  160 bits (406), Expect = 8e-38
 Identities = 75/92 (81%), Positives = 85/92 (92%)
 Frame = +1

Query: 4   VLNVETFCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQE 183
           +LNVETFC+IMRKYAR+Q+V EA+YTFN+MEKY V  NLAAFNSLLSA CKSKNV KAQE
Sbjct: 108 ILNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQE 167

Query: 184 IFDSMKDRFVPDSKTYSILLEGWGKSPNLPKA 279
           IF+ MKD+F+PDSKTYSILLEGWGK+PNLPKA
Sbjct: 168 IFNGMKDQFIPDSKTYSILLEGWGKAPNLPKA 199


>ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334980|gb|EFH65398.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 482

 Score =  160 bits (406), Expect = 8e-38
 Identities = 75/92 (81%), Positives = 83/92 (90%)
 Frame = +1

Query: 4   VLNVETFCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQE 183
           +LNVETFC++MRKYARAQ+VDEAIY FNVMEKY +  NL AFN LLSA CKSKNVRKAQE
Sbjct: 130 MLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQE 189

Query: 184 IFDSMKDRFVPDSKTYSILLEGWGKSPNLPKA 279
           IF++M+DRF PDSKTYSILLEGWGK PNLPKA
Sbjct: 190 IFENMRDRFTPDSKTYSILLEGWGKEPNLPKA 221



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +1

Query: 22  FCVIMRKYARAQRVDEAIYTFNVMEKYGVQQNLAAFNSLLSAFCKSKNVRKAQEIFDSMK 201
           + V++  Y    R++EA+ TF  ME+ G++ ++A FNSL+ AFCK+  ++    +   MK
Sbjct: 275 YSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMK 334

Query: 202 DRFV-PDSKTYSILL 243
            + V P+SK+ +I+L
Sbjct: 335 SKGVTPNSKSCNIIL 349