BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034606
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ri...   125   5e-27
ref|XP_002268218.1| PREDICTED: nifU-like protein 3, chloroplasti...   118   4e-25
ref|XP_003546416.1| PREDICTED: nifU-like protein 3, chloroplasti...   114   1e-23
gb|ABK95780.1| unknown [Populus trichocarpa]                          112   3e-23
ref|XP_004148324.1| PREDICTED: nifU-like protein 3, chloroplasti...   111   5e-23

>ref|XP_002532084.1| Nitrogen fixation protein nifU, putative [Ricinus communis]
           gi|223528244|gb|EEF30298.1| Nitrogen fixation protein
           nifU, putative [Ricinus communis]
          Length = 220

 Score =  125 bits (313), Expect = 5e-27
 Identities = 66/108 (61%), Positives = 80/108 (74%)
 Frame = +3

Query: 48  LNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYRSRKQAG 227
           +NP L   + T    LSL K    +F + SS++N+F+RG+F IRHF     +   RK AG
Sbjct: 1   MNPSLSLSERTHC--LSLFKKPVSDFCIFSSRKNAFLRGQFHIRHFSSIKLNRAPRKFAG 58

Query: 228 VVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 371
           +V++P CVLPLTEE+VEKVLDEVRPGLMADGGNV LHEIDGLVVVLKL
Sbjct: 59  LVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVVLHEIDGLVVVLKL 106


>ref|XP_002268218.1| PREDICTED: nifU-like protein 3, chloroplastic [Vitis vinifera]
           gi|297735420|emb|CBI17860.3| unnamed protein product
           [Vitis vinifera]
          Length = 237

 Score =  118 bits (296), Expect = 4e-25
 Identities = 62/114 (54%), Positives = 77/114 (67%)
 Frame = +3

Query: 30  SSKTARLNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYR 209
           S+    +N   P      + HLS+ K    + S  SS+ NSF+RG+F  RH     +   
Sbjct: 9   STAANNVNSSFPSSLWIPSSHLSISKKPISDCSAFSSRDNSFMRGQFQSRHLLGCCSRRV 68

Query: 210 SRKQAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 371
             ++AG+++ P CVLPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL
Sbjct: 69  QSRRAGILVLPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 122


>ref|XP_003546416.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Glycine max]
          Length = 236

 Score =  114 bits (284), Expect = 1e-23
 Identities = 67/118 (56%), Positives = 79/118 (66%), Gaps = 8/118 (6%)
 Frame = +3

Query: 42  ARLNPFLPPPKATSTV-------HLSLLKNFTPEFSLISSKQNSFVRGK-FSIRHFFPSN 197
           A L P     KAT T+        L  LKN        SSK+N F+RG+  +I+ FF   
Sbjct: 5   ALLTPTTQSLKATRTIAMLYPTHRLLSLKNPVSNTRGFSSKENIFIRGQQINIKQFFGLI 64

Query: 198 TSYRSRKQAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 371
           + +  R +AG V++PRC LPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL
Sbjct: 65  SGHSPRNKAGGVVSPRCGLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 122


>gb|ABK95780.1| unknown [Populus trichocarpa]
          Length = 224

 Score =  112 bits (280), Expect = 3e-23
 Identities = 64/110 (58%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +3

Query: 48  LNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSI--RHFFPSNTSYRSRKQ 221
           LNPFL   + T    L    +   +   +SSKQN+F+RG+F    RHF     +    K 
Sbjct: 2   LNPFLSLAQKTQQ-SLLFKTDAVSDSCGLSSKQNAFLRGQFQFHSRHFLHFKLNRGRMKC 60

Query: 222 AGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 371
            GVV++P CVLPLTEE+VEKVLDEVRPGLM DGGNVALHEIDGLVVVLKL
Sbjct: 61  TGVVVSPSCVLPLTEENVEKVLDEVRPGLMRDGGNVALHEIDGLVVVLKL 110


>ref|XP_004148324.1| PREDICTED: nifU-like protein 3, chloroplastic-like [Cucumis
           sativus] gi|449510563|ref|XP_004163700.1| PREDICTED:
           nifU-like protein 3, chloroplastic-like [Cucumis
           sativus]
          Length = 227

 Score =  111 bits (278), Expect = 5e-23
 Identities = 62/111 (55%), Positives = 78/111 (70%)
 Frame = +3

Query: 39  TARLNPFLPPPKATSTVHLSLLKNFTPEFSLISSKQNSFVRGKFSIRHFFPSNTSYRSRK 218
           + R  PF   P A +T++ S     +P +  +S  ++SF RG+F  RHF   N+S    +
Sbjct: 6   STRAQPFKSTPIA-ATLYRSPSHPASPSY--LSFFKSSFFRGQFCSRHFLRFNSSCTRIR 62

Query: 219 QAGVVIAPRCVLPLTEESVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKL 371
             G V++P CVLPLTEE+VEKVLDEVRPGLMADGGNVALHEIDGLVV+LKL
Sbjct: 63  HLGNVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKL 113