BLASTX nr result

ID: Coptis24_contig00034585 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034585
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631315.1| PREDICTED: uncharacterized protein LOC100265...   175   3e-42
emb|CBI27489.3| unnamed protein product [Vitis vinifera]              175   3e-42
ref|XP_002337854.1| predicted protein [Populus trichocarpa] gi|2...   156   2e-36
ref|XP_002263192.2| PREDICTED: uncharacterized protein LOC100243...   155   3e-36
emb|CBI27491.3| unnamed protein product [Vitis vinifera]              155   3e-36

>ref|XP_003631315.1| PREDICTED: uncharacterized protein LOC100265010 [Vitis vinifera]
          Length = 2792

 Score =  175 bits (444), Expect = 3e-42
 Identities = 88/126 (69%), Positives = 99/126 (78%)
 Frame = -2

Query: 379  SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
            SYFDRF DVRELS   + + SS  +Q  IRTKEV +DRF+SSYWP FN QLTKK D+S+ 
Sbjct: 1232 SYFDRFHDVRELSHGKSRSLSSIGMQTLIRTKEVTYDRFSSSYWPHFNSQLTKKLDSSSA 1291

Query: 199  FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
            FTEIIS+IKGG + GR  DGKL REDYVLLSEGRVS+LS  KRE+IYDIF DYEK KM  
Sbjct: 1292 FTEIISHIKGGLKGGRVPDGKLSREDYVLLSEGRVSTLSGQKRERIYDIFQDYEKMKMER 1351

Query: 19   GHFDLA 2
            G FDLA
Sbjct: 1352 GEFDLA 1357


>emb|CBI27489.3| unnamed protein product [Vitis vinifera]
          Length = 2562

 Score =  175 bits (444), Expect = 3e-42
 Identities = 88/126 (69%), Positives = 99/126 (78%)
 Frame = -2

Query: 379  SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
            SYFDRF DVRELS   + + SS  +Q  IRTKEV +DRF+SSYWP FN QLTKK D+S+ 
Sbjct: 1170 SYFDRFHDVRELSHGKSRSLSSIGMQTLIRTKEVTYDRFSSSYWPHFNSQLTKKLDSSSA 1229

Query: 199  FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
            FTEIIS+IKGG + GR  DGKL REDYVLLSEGRVS+LS  KRE+IYDIF DYEK KM  
Sbjct: 1230 FTEIISHIKGGLKGGRVPDGKLSREDYVLLSEGRVSTLSGQKRERIYDIFQDYEKMKMER 1289

Query: 19   GHFDLA 2
            G FDLA
Sbjct: 1290 GEFDLA 1295


>ref|XP_002337854.1| predicted protein [Populus trichocarpa] gi|222869917|gb|EEF07048.1|
           predicted protein [Populus trichocarpa]
          Length = 239

 Score =  156 bits (394), Expect = 2e-36
 Identities = 76/126 (60%), Positives = 93/126 (73%)
 Frame = -2

Query: 379 SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
           SYF+RF D+R+L     G S S   Q  IRTKEVNF++F + YWPRFN +  KK D+S V
Sbjct: 60  SYFERFSDMRQLLHEKVGNSGSISAQTLIRTKEVNFEKFCAVYWPRFNEKFKKKLDSSRV 119

Query: 199 FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
           FTEIIS+IKGG R G + DG+L REDYV+LSEGR+S+L+  KR+ IYDIF DYEK K  N
Sbjct: 120 FTEIISHIKGGLRAGESCDGRLSREDYVILSEGRISTLNRQKRDLIYDIFEDYEKMKTEN 179

Query: 19  GHFDLA 2
           G FD+A
Sbjct: 180 GDFDMA 185


>ref|XP_002263192.2| PREDICTED: uncharacterized protein LOC100243095 [Vitis vinifera]
          Length = 2788

 Score =  155 bits (392), Expect = 3e-36
 Identities = 82/126 (65%), Positives = 92/126 (73%)
 Frame = -2

Query: 379  SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
            SYF+RF+DV E        SS   +Q FIRTKEV +DRF+SSYWP FN  LTKK D+S V
Sbjct: 1254 SYFERFRDVWEFYRGKRSLSS-IGMQTFIRTKEVTYDRFSSSYWPHFNSLLTKKLDSSRV 1312

Query: 199  FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
            FTEIIS+IKGG + GR SD  L REDYVLLSE RVS+LS  KRE IYDIF DYE+ KM  
Sbjct: 1313 FTEIISHIKGGLKGGRVSDSMLSREDYVLLSEARVSTLSGQKREIIYDIFQDYEQMKMEK 1372

Query: 19   GHFDLA 2
            G FDLA
Sbjct: 1373 GEFDLA 1378


>emb|CBI27491.3| unnamed protein product [Vitis vinifera]
          Length = 6100

 Score =  155 bits (392), Expect = 3e-36
 Identities = 82/126 (65%), Positives = 92/126 (73%)
 Frame = -2

Query: 379  SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
            SYF+RF+DV E        SS   +Q FIRTKEV +DRF+SSYWP FN  LTKK D+S V
Sbjct: 4637 SYFERFRDVWEFYRGKRSLSS-IGMQTFIRTKEVTYDRFSSSYWPHFNSLLTKKLDSSRV 4695

Query: 199  FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
            FTEIIS+IKGG + GR SD  L REDYVLLSE RVS+LS  KRE IYDIF DYE+ KM  
Sbjct: 4696 FTEIISHIKGGLKGGRVSDSMLSREDYVLLSEARVSTLSGQKREIIYDIFQDYEQMKMEK 4755

Query: 19   GHFDLA 2
            G FDLA
Sbjct: 4756 GEFDLA 4761



 Score =  135 bits (339), Expect = 5e-30
 Identities = 66/126 (52%), Positives = 88/126 (69%)
 Frame = -2

Query: 379 SYFDRFQDVRELSLVTNGTSSSTPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTV 200
           SYF RF D  +        S +  L+ FIR++EVN++RF SSYWP F   L K  D+S V
Sbjct: 466 SYFSRFPDAHK-------PSRTVTLKTFIRSREVNYERFISSYWPYFKSHLIKYLDSSAV 518

Query: 199 FTEIISYIKGGFRFGRTSDGKLGREDYVLLSEGRVSSLSTDKREKIYDIFLDYEKKKMHN 20
           FTEIIS+IKGG   G+  DG L REDY+LLS+ RVS+L+ ++R+++YDIFL+YEKKK   
Sbjct: 519 FTEIISHIKGGLEAGKAHDGILSREDYLLLSKARVSTLTREQRDRVYDIFLEYEKKKFKK 578

Query: 19  GHFDLA 2
           G +DL+
Sbjct: 579 GEYDLS 584



 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
 Frame = -2

Query: 358  DVRELSLVTNGTSS---STPLQVFIRTKEVNFDRFNSSYWPRFNIQLTKKFDASTVFTEI 188
            ++ EL  + N  SS   S   +VFIR++EVN++RF SSYWP F   L K  D+S VFTEI
Sbjct: 2154 ELDELDDLLNKDSSLFNSARWKVFIRSREVNYERFISSYWPYFKSHLIKYLDSSAVFTEI 2213

Query: 187  ISYIKGGFRFGRTSDGKLGREDYVLLSEGRVS 92
            IS+IKGG   G+  DG+L REDY+LLSE RV+
Sbjct: 2214 ISHIKGGLEAGKAHDGRLSREDYLLLSEARVN 2245


Top