BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034542
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   161   6e-38
ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|2...   155   2e-36
ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...   154   9e-36
ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containi...   154   9e-36

>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  161 bits (407), Expect = 6e-38
 Identities = 76/119 (63%), Positives = 90/119 (75%)
 Frame = -2

Query: 359  FHLLIKAFCKDCVFGAAQEVFEIALSMFGHKEALYVIMLNELLAGGKTLEANQVFIAAMD 180
            F +LIKAFCK C F A+ EVFEIAL++ GHKEALY +M NELL GGK  EA ++F  A+D
Sbjct: 667  FRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALD 726

Query: 179  RGFDVRGFSYKDLIEGLCNEEKLKEARSTLHEMIDKEYQFDPASFMPLIDALGKNGNKH 3
            R FD+  F YKDLI+ LC +EKL+ A   LH +IDK YQFDPASFMP+ID  GK GNKH
Sbjct: 727  RSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKH 785


>ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|222837780|gb|EEE76145.1|
           predicted protein [Populus trichocarpa]
          Length = 742

 Score =  155 bits (393), Expect = 2e-36
 Identities = 73/119 (61%), Positives = 90/119 (75%)
 Frame = -2

Query: 359 FHLLIKAFCKDCVFGAAQEVFEIALSMFGHKEALYVIMLNELLAGGKTLEANQVFIAAMD 180
           F +LIKAFCK C F A  E+FEIAL++ GHKEALY +  NELL GG+ ++A ++F  A+D
Sbjct: 576 FSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALD 635

Query: 179 RGFDVRGFSYKDLIEGLCNEEKLKEARSTLHEMIDKEYQFDPASFMPLIDALGKNGNKH 3
           R FDV  F YKDLI+ LC +EKL +A   LH++IDK Y FDPASFMP+ID LGK GNKH
Sbjct: 636 RSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKH 694


>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
            [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
            protein product [Vitis vinifera]
          Length = 878

 Score =  155 bits (391), Expect = 4e-36
 Identities = 76/119 (63%), Positives = 89/119 (74%)
 Frame = -2

Query: 359  FHLLIKAFCKDCVFGAAQEVFEIALSMFGHKEALYVIMLNELLAGGKTLEANQVFIAAMD 180
            F LLIKAFCK   FG  +EVFEIALS+ GHKEALY +M NELL GG+  EA ++F AA+D
Sbjct: 671  FRLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALD 730

Query: 179  RGFDVRGFSYKDLIEGLCNEEKLKEARSTLHEMIDKEYQFDPASFMPLIDALGKNGNKH 3
            R FD+  F Y DLIE LC +E L+ A   LH+MIDK Y+FDPASFMP+ID LGK G KH
Sbjct: 731  RCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKH 789


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
            [Cucumis sativus]
          Length = 875

 Score =  154 bits (388), Expect = 9e-36
 Identities = 74/119 (62%), Positives = 93/119 (78%)
 Frame = -2

Query: 359  FHLLIKAFCKDCVFGAAQEVFEIALSMFGHKEALYVIMLNELLAGGKTLEANQVFIAAMD 180
            F +LI AF K C FGAAQE+FEIALS+ GHKE+LY  M NELLAGG+TL+A ++F AA+D
Sbjct: 672  FRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALD 731

Query: 179  RGFDVRGFSYKDLIEGLCNEEKLKEARSTLHEMIDKEYQFDPASFMPLIDALGKNGNKH 3
            R   ++ F Y+DLIE LC + KL +A   LH+M+DK+Y FDPASFMP+ID LGK G+KH
Sbjct: 732  RSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKH 790


>ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
            [Cucumis sativus] gi|449472527|ref|XP_004153621.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  154 bits (388), Expect = 9e-36
 Identities = 74/119 (62%), Positives = 93/119 (78%)
 Frame = -2

Query: 359  FHLLIKAFCKDCVFGAAQEVFEIALSMFGHKEALYVIMLNELLAGGKTLEANQVFIAAMD 180
            F +LI AF K C FGAAQE+FEIALS+ GHKE+LY  M NELLAGG+TL+A ++F AA+D
Sbjct: 672  FRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALD 731

Query: 179  RGFDVRGFSYKDLIEGLCNEEKLKEARSTLHEMIDKEYQFDPASFMPLIDALGKNGNKH 3
            R   ++ F Y+DLIE LC + KL +A   LH+M+DK+Y FDPASFMP+ID LGK G+KH
Sbjct: 732  RSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKH 790