BLASTX nr result

ID: Coptis24_contig00034467 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034467
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38188.3| unnamed protein product [Vitis vinifera]              134   1e-29
emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]   134   1e-29
ref|XP_002512645.1| pentatricopeptide repeat-containing protein,...   130   9e-29
ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|2...   121   5e-26
ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat...   117   8e-25

>emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  134 bits (336), Expect = 1e-29
 Identities = 63/95 (66%), Positives = 75/95 (78%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           NN+TFAS  KAC GL A D+GKS+HGCALK+ Y++D YVG  LLD+YTK GD D A   F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAF 298

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             +P KDVI WSFMIARYAQS +S+EAVE++FQMR
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMR 333



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/95 (34%), Positives = 55/95 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N + F + LK        +LG  IH C  K  ++ + +VG  L+D Y+ CG  D A  VF
Sbjct: 138 NPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVF 197

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
           +G+  KD++ W+ M+  +A++   +EA++L+ QMR
Sbjct: 198 DGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMR 232



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 31/94 (32%), Positives = 54/94 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N +TFAS L+AC  +  ++LG  IH   +K     D +V   L+D+Y KCG  + ++ +F
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 399

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQM 4
              P+++ + W+ +I  + Q G  E+A+ L+  M
Sbjct: 400 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNM 433


>emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  134 bits (336), Expect = 1e-29
 Identities = 63/95 (66%), Positives = 75/95 (78%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           NN+TFAS  KAC GL A D+GKS+HGCALK+ Y++D YVG  LLD+YTK GD D A   F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAF 298

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             +P KDVI WSFMIARYAQS +S+EAVE++FQMR
Sbjct: 299 EEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMR 333



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/95 (34%), Positives = 56/95 (58%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N + F + LK    +   +LG  IH C  K  ++ + +VG  L+D Y+ CG  D A  VF
Sbjct: 138 NPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVF 197

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
           +G+  KD++ W+ M+  +A++   +EA++L+ QMR
Sbjct: 198 DGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMR 232



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = -2

Query: 276 TFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVFNGM 97
           T++S L+AC  LAA++ G  IH   +KT +D D  V   L+DMY KCG    A  VF+ M
Sbjct: 445 TYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLM 504

Query: 96  PNKDVILWSFMIARYAQSG 40
             +D + W+ MI+ Y+  G
Sbjct: 505 NKQDEVSWNAMISGYSMHG 523



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N +TFAS L+AC  +  ++LG  IH   +K     D +V   L+D+Y KCG  + ++ +F
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLF 399

Query: 105 NGMPNK-DVILWSFMIARYAQSGKSEEAVELYFQM 4
              P++ DV  W+ +I  + Q G  E+A+ L+  M
Sbjct: 400 AESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNM 434


>ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548606|gb|EEF50097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 716

 Score =  130 bits (328), Expect = 9e-29
 Identities = 62/95 (65%), Positives = 72/95 (75%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N++TFA  LKAC GL A  +GKS+HGC LKTCY+MD YVG  LLD+YTK GD +  L VF
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVF 200

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             MP  DVI WSFMI+RYAQS +S EAVEL+ QMR
Sbjct: 201 EEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMR 235



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%)
 Frame = -2

Query: 276 TFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVFNGM 97
           T++S L+AC  LAA++LG  IH  +LKT YD D  VG  L+DMY KCG    A  VF+ +
Sbjct: 346 TYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDML 405

Query: 96  PNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             +D I W+ MI+ Y+  G   EA++ +  M+
Sbjct: 406 SERDEISWNAMISGYSMHGLVGEALKAFQMMQ 437



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 36/94 (38%), Positives = 57/94 (60%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N +TFAS L++C  +  + LGK +H   LK   D + +V   L+D+Y KCG  D ++ +F
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQM 4
             +PN++ + W+ MI  Y QSG  ++A+ LY  M
Sbjct: 302 MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 28/95 (29%), Positives = 56/95 (58%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N + F + LK    +   +L  S+H C  K  ++ + +VG  L+D Y  CG  ++A   F
Sbjct: 40  NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF 99

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
           + +  KD++ W+ M+A YA++ + +++++L+ +MR
Sbjct: 100 DAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMR 134


>ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|222842084|gb|EEE79631.1|
           predicted protein [Populus trichocarpa]
          Length = 820

 Score =  121 bits (304), Expect = 5e-26
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           NN+TFAS LKAC GL   ++GK++HGCA KT Y  + +VG  L+D+Y K GD D AL VF
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             MP  DVI WSFMIARYAQS +SEEA+E++ +MR
Sbjct: 305 EEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR 339



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/91 (39%), Positives = 56/91 (61%)
 Frame = -2

Query: 276 TFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVFNGM 97
           T++S L+AC G+AA++ G  IH  ++KT YD +  VG  L+DMY KCG+   A  VF+ +
Sbjct: 450 TYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDML 509

Query: 96  PNKDVILWSFMIARYAQSGKSEEAVELYFQM 4
              D + W+ MI+ Y+  G   EA++ +  M
Sbjct: 510 REHDQVSWNAMISGYSVHGLYGEALKTFESM 540



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 36/94 (38%), Positives = 54/94 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N +T AS L+AC  L  + LG  IH   +K   DM+ +V   L+DMY KCG  + +L +F
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLF 405

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQM 4
           +  PN   + W+ +I  Y Q+G  E+A+ L+  M
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM 439



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/95 (34%), Positives = 55/95 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N + F++ LK         LG S+H C  K  +D D +VG  L+D Y+ CG  + A  VF
Sbjct: 144 NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVF 203

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
           + +  KD++ W+ M+A Y ++   EE+++L+ +MR
Sbjct: 204 DAIEYKDMVSWTGMVACYVENECFEESLKLFSRMR 238


>ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
           gi|449515059|ref|XP_004164567.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At5g13230,
           mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  117 bits (294), Expect = 8e-25
 Identities = 55/95 (57%), Positives = 69/95 (72%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           NN+TFA  LKAC GL   D GK++H   LKT Y+ D YVG  LL++YT+CGD D A   F
Sbjct: 146 NNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAF 205

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             MP  DVI WSFMI+R+AQSG+SE+A+E++ QMR
Sbjct: 206 GDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/95 (35%), Positives = 55/95 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N + F + LK    +   +LG+ +HGC LK  Y  + ++G  L+D Y+  G    A  VF
Sbjct: 45  NPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVF 104

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
           + + +KD++ W+ MIA YA++    EA+E + QMR
Sbjct: 105 DEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR 139



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/92 (36%), Positives = 54/92 (58%)
 Frame = -2

Query: 276 TFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVFNGM 97
           T++S L+AC  LAA++LG  +H    KT Y  D  VG  L+DMY KCG    A  +F+ +
Sbjct: 351 TYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDML 410

Query: 96  PNKDVILWSFMIARYAQSGKSEEAVELYFQMR 1
             +D + W+ +I  Y+  G   EA++++  M+
Sbjct: 411 DLRDKVSWNAIICGYSMHGLGVEAIKMFNLMK 442



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/94 (34%), Positives = 54/94 (57%)
 Frame = -2

Query: 285 NNYTFASTLKACTGLAAVDLGKSIHGCALKTCYDMDHYVGANLLDMYTKCGDFDAALAVF 106
           N +TF+S L+A   + ++DL K+IHG ALK     D +V   L+  Y KCG  + ++ +F
Sbjct: 247 NQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELF 306

Query: 105 NGMPNKDVILWSFMIARYAQSGKSEEAVELYFQM 4
             + +++ + W+ +I  Y Q G  E A+ L+  M
Sbjct: 307 EALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM 340


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