BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034458
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
emb|CAN67095.1| hypothetical protein VITISV_016806 [Vitis vinifera]   185   4e-45
ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containi...   181   4e-44
ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   180   1e-43
ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containi...   180   1e-43

>ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  185 bits (469), Expect = 4e-45
 Identities = 92/124 (74%), Positives = 99/124 (79%)
 Frame = -1

Query: 372 VELQNCVHEFVMGDKAHPQTEEIYXXXXXXXXXXXXEGYVPRTSNVLADIEEEEKENTLS 193
           VEL+N +HEFVMGD++HPQTEEIY            EGYVP  SNVLADIEEEEKE  LS
Sbjct: 484 VELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALS 543

Query: 192 YHSEKIAIAFALINTAPKTPVRIVKNLRVCQDCHIAIKLISKAFDREIVVRDRSRFHHFK 13
           YHSEKIAIAF LINTA   P+R+VKNLRVC DCH+AIKLISK FDREIVVRDRSRFHHFK
Sbjct: 544 YHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFK 603

Query: 12  GGTC 1
            G C
Sbjct: 604 DGHC 607


>emb|CAN67095.1| hypothetical protein VITISV_016806 [Vitis vinifera]
          Length = 348

 Score =  185 bits (469), Expect = 4e-45
 Identities = 92/124 (74%), Positives = 99/124 (79%)
 Frame = -1

Query: 372 VELQNCVHEFVMGDKAHPQTEEIYXXXXXXXXXXXXEGYVPRTSNVLADIEEEEKENTLS 193
           VEL+N +HEFVMGD++HPQTEEIY            EGYVP  SNVLADIEEEEKE  LS
Sbjct: 219 VELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALS 278

Query: 192 YHSEKIAIAFALINTAPKTPVRIVKNLRVCQDCHIAIKLISKAFDREIVVRDRSRFHHFK 13
           YHSEKIAIAF LINTA   P+R+VKNLRVC DCH+AIKLISK FDREIVVRDRSRFHHFK
Sbjct: 279 YHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFK 338

Query: 12  GGTC 1
            G C
Sbjct: 339 DGHC 342


>ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  181 bits (460), Expect = 4e-44
 Identities = 83/124 (66%), Positives = 103/124 (83%)
 Frame = -1

Query: 372 VELQNCVHEFVMGDKAHPQTEEIYXXXXXXXXXXXXEGYVPRTSNVLADIEEEEKENTLS 193
           VEL+N V+EFVMGD++HP+T++IY            +GY+P TSNVLADIE+EEKE+ L+
Sbjct: 469 VELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALN 528

Query: 192 YHSEKIAIAFALINTAPKTPVRIVKNLRVCQDCHIAIKLISKAFDREIVVRDRSRFHHFK 13
           YHSE++AIAFAL+ + P TP+RIVKNLRVC DCH+AIKLISK +DREI+VRDRSRFHHFK
Sbjct: 529 YHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFK 588

Query: 12  GGTC 1
           GG C
Sbjct: 589 GGAC 592


>ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  180 bits (456), Expect = 1e-43
 Identities = 85/124 (68%), Positives = 101/124 (81%)
 Frame = -1

Query: 372 VELQNCVHEFVMGDKAHPQTEEIYXXXXXXXXXXXXEGYVPRTSNVLADIEEEEKENTLS 193
           VEL+N V+EF+MGD++HPQ+EE Y            EGYVPRT NVLADIEEEEKE  LS
Sbjct: 480 VELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALS 539

Query: 192 YHSEKIAIAFALINTAPKTPVRIVKNLRVCQDCHIAIKLISKAFDREIVVRDRSRFHHFK 13
           +H+EK+AIAF L+NT P TP+RI+KNLRVC DCH+AIKLISK F+REI+VRDRSRFHHFK
Sbjct: 540 HHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFK 599

Query: 12  GGTC 1
            G+C
Sbjct: 600 DGSC 603


>ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  180 bits (456), Expect = 1e-43
 Identities = 85/124 (68%), Positives = 101/124 (81%)
 Frame = -1

Query: 372 VELQNCVHEFVMGDKAHPQTEEIYXXXXXXXXXXXXEGYVPRTSNVLADIEEEEKENTLS 193
           VEL+N V+EF+MGD++HPQ+EE Y            EGYVPRT NVLADIEEEEKE  LS
Sbjct: 480 VELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALS 539

Query: 192 YHSEKIAIAFALINTAPKTPVRIVKNLRVCQDCHIAIKLISKAFDREIVVRDRSRFHHFK 13
           +H+EK+AIAF L+NT P TP+RI+KNLRVC DCH+AIKLISK F+REI+VRDRSRFHHFK
Sbjct: 540 HHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFK 599

Query: 12  GGTC 1
            G+C
Sbjct: 600 DGSC 603