BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034445
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   240   8e-62
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]     239   2e-61
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   239   2e-61
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]   238   4e-61
emb|CAN71472.1| hypothetical protein VITISV_040055 [Vitis vinifera]   236   1e-60

>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  240 bits (613), Expect = 8e-62
 Identities = 108/158 (68%), Positives = 132/158 (83%)
 Frame = -2

Query: 475  AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296
            AE+V+KC  CQQVK EHQRP G  Q + + EWKWE++ MDF+ GLPRS+R HD+IWVIVD
Sbjct: 1207 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1266

Query: 295  RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116
            R+TKSAHFLPVR T+S +D  +LYI+EIVRLHGVP+SI+SDR +QFT++FWKSFQK LG+
Sbjct: 1267 RMTKSAHFLPVRTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1326

Query: 115  TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2
             + LSTAFHPQT+GQ ER  Q LEDMLRAC++DFK  W
Sbjct: 1327 KVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNW 1364


>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
          Length = 1771

 Score =  239 bits (610), Expect = 2e-61
 Identities = 110/158 (69%), Positives = 131/158 (82%)
 Frame = -2

Query: 475  AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296
            A++VS+C  CQQVKAEH RP G  Q LP+ EWKWE +TMDFV GLPR+ RG D+IWVIVD
Sbjct: 1383 ADFVSRCLCCQQVKAEHLRPGGEFQRLPIPEWKWERITMDFVVGLPRTSRGVDSIWVIVD 1442

Query: 295  RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116
            RLTKSAHFLPV  T S + L R+YIRE+VRLHGVPVSI+SDR SQFTS FW++FQ+ LGT
Sbjct: 1443 RLTKSAHFLPVHTTFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSSFWRAFQEELGT 1502

Query: 115  TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2
             + LST+FHPQT+GQ+ER  Q+LEDMLRAC++DF G W
Sbjct: 1503 RVHLSTSFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 1540


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  239 bits (610), Expect = 2e-61
 Identities = 107/158 (67%), Positives = 132/158 (83%)
 Frame = -2

Query: 475  AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296
            AE+V+KC  CQQVK EHQRP G  Q + + EWKWE++ MDF+ GLPRS+R HD+IWVIVD
Sbjct: 1213 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1272

Query: 295  RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116
            R+TKSAHFLPV+ T+S +D  +LYI+EIVRLHGVP+SI+SDR +QFT++FWKSFQK LG+
Sbjct: 1273 RMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1332

Query: 115  TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2
             + LSTAFHPQT+GQ ER  Q LEDMLRAC++DFK  W
Sbjct: 1333 KVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNW 1370


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score =  238 bits (607), Expect = 4e-61
 Identities = 109/158 (68%), Positives = 132/158 (83%)
 Frame = -2

Query: 475  AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296
            A++VS+C  CQQVKAEH RP G  + LP+ EWKWE +TMDF+ GLPR+ RG D+IWVIVD
Sbjct: 1227 ADFVSRCLCCQQVKAEHLRPGGVFKRLPIPEWKWERITMDFIVGLPRTPRGVDSIWVIVD 1286

Query: 295  RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116
            RLTKSAHFLPV+ + S + L R+YIRE+VRLHGVPVSI+SDR SQFTS FW++FQ  LGT
Sbjct: 1287 RLTKSAHFLPVQCSFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSNFWRTFQDELGT 1346

Query: 115  TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2
             +DLSTAFHPQT+GQ+ER  Q+LEDMLRAC++DF G W
Sbjct: 1347 RVDLSTAFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 1384


>emb|CAN71472.1| hypothetical protein VITISV_040055 [Vitis vinifera]
          Length = 374

 Score =  236 bits (602), Expect = 1e-60
 Identities = 109/158 (68%), Positives = 131/158 (82%)
 Frame = -2

Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296
           A++V++C  CQQVKAEHQRPAG LQPL + EWKWE +TMDFV GLPR+  G++ IWVIVD
Sbjct: 6   AQFVAQCLVCQQVKAEHQRPAGSLQPLAIPEWKWEHITMDFVIGLPRTLGGNNAIWVIVD 65

Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116
           RLTKSAHFLP++   S+D L  LY++EIVR+HGVPVSIVSDRD +FTSRFW S QK LGT
Sbjct: 66  RLTKSAHFLPMKVNFSLDRLASLYVKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKALGT 125

Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2
            L  STAFHPQT+GQ+E V Q+LED+LRACIL+ +G W
Sbjct: 126 KLSFSTAFHPQTDGQSEMVIQVLEDLLRACILELQGNW 163