BLASTX nr result
ID: Coptis24_contig00034445
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00034445 (476 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ... 240 8e-62 gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum] 239 2e-61 gb|AAT38724.1| Putative retrotransposon protein, identical [Sola... 239 2e-61 gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum] 238 4e-61 emb|CAN71472.1| hypothetical protein VITISV_040055 [Vitis vinifera] 236 1e-60 >gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum] Length = 1515 Score = 240 bits (613), Expect = 8e-62 Identities = 108/158 (68%), Positives = 132/158 (83%) Frame = -2 Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296 AE+V+KC CQQVK EHQRP G Q + + EWKWE++ MDF+ GLPRS+R HD+IWVIVD Sbjct: 1207 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1266 Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116 R+TKSAHFLPVR T+S +D +LYI+EIVRLHGVP+SI+SDR +QFT++FWKSFQK LG+ Sbjct: 1267 RMTKSAHFLPVRTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1326 Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2 + LSTAFHPQT+GQ ER Q LEDMLRAC++DFK W Sbjct: 1327 KVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNW 1364 >gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum] Length = 1771 Score = 239 bits (610), Expect = 2e-61 Identities = 110/158 (69%), Positives = 131/158 (82%) Frame = -2 Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296 A++VS+C CQQVKAEH RP G Q LP+ EWKWE +TMDFV GLPR+ RG D+IWVIVD Sbjct: 1383 ADFVSRCLCCQQVKAEHLRPGGEFQRLPIPEWKWERITMDFVVGLPRTSRGVDSIWVIVD 1442 Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116 RLTKSAHFLPV T S + L R+YIRE+VRLHGVPVSI+SDR SQFTS FW++FQ+ LGT Sbjct: 1443 RLTKSAHFLPVHTTFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSSFWRAFQEELGT 1502 Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2 + LST+FHPQT+GQ+ER Q+LEDMLRAC++DF G W Sbjct: 1503 RVHLSTSFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 1540 >gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum] Length = 1602 Score = 239 bits (610), Expect = 2e-61 Identities = 107/158 (67%), Positives = 132/158 (83%) Frame = -2 Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296 AE+V+KC CQQVK EHQRP G Q + + EWKWE++ MDF+ GLPRS+R HD+IWVIVD Sbjct: 1213 AEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIVD 1272 Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116 R+TKSAHFLPV+ T+S +D +LYI+EIVRLHGVP+SI+SDR +QFT++FWKSFQK LG+ Sbjct: 1273 RMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLGS 1332 Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2 + LSTAFHPQT+GQ ER Q LEDMLRAC++DFK W Sbjct: 1333 KVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNW 1370 >gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum] Length = 1475 Score = 238 bits (607), Expect = 4e-61 Identities = 109/158 (68%), Positives = 132/158 (83%) Frame = -2 Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296 A++VS+C CQQVKAEH RP G + LP+ EWKWE +TMDF+ GLPR+ RG D+IWVIVD Sbjct: 1227 ADFVSRCLCCQQVKAEHLRPGGVFKRLPIPEWKWERITMDFIVGLPRTPRGVDSIWVIVD 1286 Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116 RLTKSAHFLPV+ + S + L R+YIRE+VRLHGVPVSI+SDR SQFTS FW++FQ LGT Sbjct: 1287 RLTKSAHFLPVQCSFSAERLARIYIREVVRLHGVPVSIISDRGSQFTSNFWRTFQDELGT 1346 Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2 +DLSTAFHPQT+GQ+ER Q+LEDMLRAC++DF G W Sbjct: 1347 RVDLSTAFHPQTDGQSERTIQVLEDMLRACVMDFGGQW 1384 >emb|CAN71472.1| hypothetical protein VITISV_040055 [Vitis vinifera] Length = 374 Score = 236 bits (602), Expect = 1e-60 Identities = 109/158 (68%), Positives = 131/158 (82%) Frame = -2 Query: 475 AEYVSKCFTCQQVKAEHQRPAGPLQPLPVAEWKWELVTMDFVEGLPRSKRGHDTIWVIVD 296 A++V++C CQQVKAEHQRPAG LQPL + EWKWE +TMDFV GLPR+ G++ IWVIVD Sbjct: 6 AQFVAQCLVCQQVKAEHQRPAGSLQPLAIPEWKWEHITMDFVIGLPRTLGGNNAIWVIVD 65 Query: 295 RLTKSAHFLPVRKTNSIDDLCRLYIREIVRLHGVPVSIVSDRDSQFTSRFWKSFQKVLGT 116 RLTKSAHFLP++ S+D L LY++EIVR+HGVPVSIVSDRD +FTSRFW S QK LGT Sbjct: 66 RLTKSAHFLPMKVNFSLDRLASLYVKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKALGT 125 Query: 115 TLDLSTAFHPQTNGQTERVNQILEDMLRACILDFKGGW 2 L STAFHPQT+GQ+E V Q+LED+LRACIL+ +G W Sbjct: 126 KLSFSTAFHPQTDGQSEMVIQVLEDLLRACILELQGNW 163