BLASTX nr result
ID: Coptis24_contig00034375
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00034375 (310 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi... 92 4e-17 ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containi... 90 2e-16 ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245... 87 1e-15 emb|CBI34885.3| unnamed protein product [Vitis vinifera] 87 1e-15 emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera] 87 1e-15 >ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] Length = 679 Score = 92.0 bits (227), Expect = 4e-17 Identities = 40/87 (45%), Positives = 57/87 (65%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 GK++HGL LK+G + VQ + ++MY CG R VFD ++DKDV+ WN++I GY + Sbjct: 131 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYAR 190 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIVD 48 CGE A ++FE MP R+ SW +VD Sbjct: 191 CGEIDIALQLFEEMPERDAFSWTVLVD 217 Score = 54.7 bits (130), Expect = 8e-06 Identities = 24/79 (30%), Positives = 44/79 (55%) Frame = -3 Query: 248 TAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIKCGEYGYAKEVFELMPVRNVS 69 T +D CG R +FD++ ++++ WN MI GY+K G++ A E+F MP+ ++ Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLV 272 Query: 68 SWNTIVDIVNVGSLVTDSV 12 +WN ++ + D+V Sbjct: 273 TWNLMIAGYELNGQFMDAV 291 >ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Brachypodium distachyon] Length = 500 Score = 90.1 bits (222), Expect = 2e-16 Identities = 37/86 (43%), Positives = 55/86 (63%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G +LH ++++ G A V + I Y +CG + R VFD+ DKD+ CWN MI+GY+K Sbjct: 88 GPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYVK 147 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G A+E+F++MP RNV SW T++ Sbjct: 148 SGNLACARELFDVMPARNVVSWTTVI 173 >ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera] Length = 1984 Score = 87.4 bits (215), Expect = 1e-15 Identities = 38/86 (44%), Positives = 57/86 (66%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G +HG V K+G + + + ++ ID+YC CG GRLVFD I++K+V+CWN+M+ GY Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G +E+FEL+P +N SW TI+ Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTII 420 Score = 58.5 bits (140), Expect = 5e-07 Identities = 27/86 (31%), Positives = 46/86 (53%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G + GLV+K G L V + I + G R VFD++ +DV+ W ++ Y++ Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G+ A+ +F+ MP RN SW+ ++ Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288 >emb|CBI34885.3| unnamed protein product [Vitis vinifera] Length = 728 Score = 87.4 bits (215), Expect = 1e-15 Identities = 38/86 (44%), Positives = 57/86 (66%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G +HG V K+G + + + ++ ID+YC CG GRLVFD I++K+V+CWN+M+ GY Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G +E+FEL+P +N SW TI+ Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTII 420 Score = 58.5 bits (140), Expect = 5e-07 Identities = 27/86 (31%), Positives = 46/86 (53%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G + GLV+K G L V + I + G R VFD++ +DV+ W ++ Y++ Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G+ A+ +F+ MP RN SW+ ++ Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288 >emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera] Length = 728 Score = 87.0 bits (214), Expect = 1e-15 Identities = 38/86 (44%), Positives = 57/86 (66%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G +HG V K+G + + + ++ ID+YC CG GRLVFD I++K+V+CWN+M+ GY Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G +E+FEL+P +N SW TI+ Sbjct: 395 NGRLEEXEELFELIPEKNDXSWGTIJ 420 Score = 58.5 bits (140), Expect = 5e-07 Identities = 27/86 (31%), Positives = 46/86 (53%) Frame = -3 Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129 G + GLV+K G L V + I + G R VFD++ +DV+ W ++ Y++ Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262 Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51 G+ A+ +F+ MP RN SW+ ++ Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288