BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00034375
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245...    87   1e-15
emb|CBI34885.3| unnamed protein product [Vitis vinifera]               87   1e-15
emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]    87   1e-15

>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 40/87 (45%), Positives = 57/87 (65%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           GK++HGL LK+G    + VQ + ++MY  CG     R VFD ++DKDV+ WN++I GY +
Sbjct: 131 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYAR 190

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIVD 48
           CGE   A ++FE MP R+  SW  +VD
Sbjct: 191 CGEIDIALQLFEEMPERDAFSWTVLVD 217



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/79 (30%), Positives = 44/79 (55%)
 Frame = -3

Query: 248 TAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIKCGEYGYAKEVFELMPVRNVS 69
           T  +D    CG     R +FD++  ++++ WN MI GY+K G++  A E+F  MP+ ++ 
Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLV 272

Query: 68  SWNTIVDIVNVGSLVTDSV 12
           +WN ++    +     D+V
Sbjct: 273 TWNLMIAGYELNGQFMDAV 291


>ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Brachypodium distachyon]
          Length = 500

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G +LH ++++ G A    V  + I  Y +CG  +  R VFD+  DKD+ CWN MI+GY+K
Sbjct: 88  GPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYVK 147

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G    A+E+F++MP RNV SW T++
Sbjct: 148 SGNLACARELFDVMPARNVVSWTTVI 173


>ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 38/86 (44%), Positives = 57/86 (66%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  +HG V K+G  + + + ++ ID+YC CG    GRLVFD I++K+V+CWN+M+ GY  
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G     +E+FEL+P +N  SW TI+
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTII 420



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  + GLV+K G    L V  + I +    G     R VFD++  +DV+ W  ++  Y++
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G+   A+ +F+ MP RN  SW+ ++
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288


>emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 38/86 (44%), Positives = 57/86 (66%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  +HG V K+G  + + + ++ ID+YC CG    GRLVFD I++K+V+CWN+M+ GY  
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G     +E+FEL+P +N  SW TI+
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTII 420



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  + GLV+K G    L V  + I +    G     R VFD++  +DV+ W  ++  Y++
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G+   A+ +F+ MP RN  SW+ ++
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288


>emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 38/86 (44%), Positives = 57/86 (66%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  +HG V K+G  + + + ++ ID+YC CG    GRLVFD I++K+V+CWN+M+ GY  
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G     +E+FEL+P +N  SW TI+
Sbjct: 395 NGRLEEXEELFELIPEKNDXSWGTIJ 420



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = -3

Query: 308 GKELHGLVLKMGCAERLIVQTAFIDMYCACGLSSYGRLVFDKIVDKDVICWNTMIAGYIK 129
           G  + GLV+K G    L V  + I +    G     R VFD++  +DV+ W  ++  Y++
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 128 CGEYGYAKEVFELMPVRNVSSWNTIV 51
            G+   A+ +F+ MP RN  SW+ ++
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMI 288